Strain identifier
BacDive ID: 1769
Type strain:
Species: Neoscardovia arbecensis
Strain Designation: PG10
Strain history: <- C. Garcia-Aljaro, Univ. Barcelona, Spain; PG10 <- E. Ballesté
NCBI tax ID(s): 1004583 (species)
General
@ref: 18105
BacDive-ID: 1769
DSM-Number: 25737
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Neoscardovia arbecensis PG10 is an anaerobe, mesophilic bacterium that was isolated from pig slurries.
NCBI tax id
- NCBI tax id: 1004583
- Matching level: species
strain history
- @ref: 18105
- history: <- C. Garcia-Aljaro, Univ. Barcelona, Spain; PG10 <- E. Ballesté
doi: 10.13145/bacdive1769.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Neoscardovia
- species: Neoscardovia arbecensis
- full scientific name: Neoscardovia arbecensis García-Aljaro et al. 2015
@ref: 18105
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Neoscardovia
species: Neoscardovia arbecensis
full scientific name: Neoscardovia arbecensis García-Aljaro et al. 2015
strain designation: PG10
type strain: yes
Culture and growth conditions
culture medium
- @ref: 18105
- name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104
- composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
culture temp
- @ref: 18105
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 18105
- oxygen tolerance: anaerobe
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | + | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | + | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | + | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | + | builds acid from | 28087 |
68371 | starch | + | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | + | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | + | builds acid from | 30849 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18105 | - | - | - | +/- | + | + | + | - | - | - | + | + | + | - | - | - | - | - | - | - | - | - | - | - | - | + | +/- | +/- | + | - | - | - | - | - | - | - | + | + | - | - | + | - | - | - | + | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 18105
- sample type: pig slurries
- geographic location: Catalonia, Lleida, Arbeca
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Suidae (Pig,Swine) |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_21878.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_11063;97_13401;98_16497;99_21878&stattab=map
- Last taxonomy: Neoscardovia arbecensis subclade
- 16S sequence: JF519691
- Sequence Identity:
- Total samples: 8933
- soil counts: 379
- aquatic counts: 348
- animal counts: 8054
- plant counts: 152
Safety information
risk assessment
- @ref: 18105
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18105
- description: Neoscardovia arbecensis strain PG10 16S ribosomal RNA gene, partial sequence
- accession: JF519691
- length: 1342
- database: ena
- NCBI tax ID: 1004583
GC content
- @ref: 18105
- GC-content: 57.0
- method: high performance liquid chromatography (HPLC)
External links
@ref: 18105
culture collection no.: DSM 25737, CECT 8111
straininfo link
- @ref: 71416
- straininfo: 394941
literature
- topic: Phylogeny
- Pubmed-ID: 22824582
- title: Neoscardovia arbecensis gen. nov., sp. nov., isolated from porcine slurries.
- authors: Garcia-Aljaro C, Balleste E, Rossello-Mora R, Cifuentes A, Richter M, Blanch AR
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2012.06.007
- year: 2012
- mesh: Animals, Bifidobacterium/chemistry/*classification/genetics/*isolation & purification, DNA, Bacterial/genetics, Genes, Bacterial/genetics, Lipids/analysis/chemistry, Manure/*microbiology, Phenotype, RNA, Ribosomal, 16S/genetics, Swine
- topic2: Phenotype
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
18105 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25737) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25737 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
68371 | Automatically annotated from API 50CH acid | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
71416 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID394941.1 | StrainInfo: A central database for resolving microbial strain identifiers |