Strain identifier

BacDive ID: 1769

Type strain: Yes

Species: Neoscardovia arbecensis

Strain Designation: PG10

Strain history: <- C. Garcia-Aljaro, Univ. Barcelona, Spain; PG10 <- E. Ballesté

NCBI tax ID(s): 1004583 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18105

BacDive-ID: 1769

DSM-Number: 25737

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Neoscardovia arbecensis PG10 is an anaerobe, mesophilic bacterium that was isolated from pig slurries.

NCBI tax id

  • NCBI tax id: 1004583
  • Matching level: species

strain history

  • @ref: 18105
  • history: <- C. Garcia-Aljaro, Univ. Barcelona, Spain; PG10 <- E. Ballesté

doi: 10.13145/bacdive1769.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Neoscardovia
  • species: Neoscardovia arbecensis
  • full scientific name: Neoscardovia arbecensis García-Aljaro et al. 2015

@ref: 18105

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Neoscardovia

species: Neoscardovia arbecensis

full scientific name: Neoscardovia arbecensis García-Aljaro et al. 2015

strain designation: PG10

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 18105
  • name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104
  • composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

culture temp

  • @ref: 18105
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 18105
  • oxygen tolerance: anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose+builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
18105---+/-+++---+++------------++/-+/-+-------++--+---+--+--

Isolation, sampling and environmental information

isolation

  • @ref: 18105
  • sample type: pig slurries
  • geographic location: Catalonia, Lleida, Arbeca
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_21878.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_11063;97_13401;98_16497;99_21878&stattab=map
  • Last taxonomy: Neoscardovia arbecensis subclade
  • 16S sequence: JF519691
  • Sequence Identity:
  • Total samples: 8933
  • soil counts: 379
  • aquatic counts: 348
  • animal counts: 8054
  • plant counts: 152

Safety information

risk assessment

  • @ref: 18105
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18105
  • description: Neoscardovia arbecensis strain PG10 16S ribosomal RNA gene, partial sequence
  • accession: JF519691
  • length: 1342
  • database: ena
  • NCBI tax ID: 1004583

GC content

  • @ref: 18105
  • GC-content: 57.0
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 18105

culture collection no.: DSM 25737, CECT 8111

straininfo link

  • @ref: 71416
  • straininfo: 394941

literature

  • topic: Phylogeny
  • Pubmed-ID: 22824582
  • title: Neoscardovia arbecensis gen. nov., sp. nov., isolated from porcine slurries.
  • authors: Garcia-Aljaro C, Balleste E, Rossello-Mora R, Cifuentes A, Richter M, Blanch AR
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2012.06.007
  • year: 2012
  • mesh: Animals, Bifidobacterium/chemistry/*classification/genetics/*isolation & purification, DNA, Bacterial/genetics, Genes, Bacterial/genetics, Lipids/analysis/chemistry, Manure/*microbiology, Phenotype, RNA, Ribosomal, 16S/genetics, Swine
  • topic2: Phenotype

Reference

@idauthorscataloguedoi/urltitle
18105Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25737)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25737
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71416Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID394941.1StrainInfo: A central database for resolving microbial strain identifiers