Strain identifier
BacDive ID: 17687
Type strain: 
Species: Sporobacter termitidis
Strain Designation: SYR
Strain history: <- J.-L. Garcia; SYR <- I. Grech-Mora {1994}
NCBI tax ID(s): 1123282 (strain), 44749 (species)
version 8.1 (current version)
General
@ref: 3793
BacDive-ID: 17687
DSM-Number: 10068
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive
description: Sporobacter termitidis SYR is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from wood-feeding termite Nasutitermes lujae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1123282 | strain |
| 44749 | species |
strain history
- @ref: 3793
- history: <- J.-L. Garcia; SYR <- I. Grech-Mora {1994}
doi: 10.13145/bacdive17687.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Sporobacter
- species: Sporobacter termitidis
- full scientific name: Sporobacter termitidis Grech-Mora et al. 1996
@ref: 3793
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Oscillospiraceae
genus: Sporobacter
species: Sporobacter termitidis
full scientific name: Sporobacter termitidis Grech-Mora et al. 1996
strain designation: SYR
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 99.999
colony morphology
- @ref: 3793
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 3793
- name: SPOROBACTER MEDIUM (DSMZ Medium 711)
- growth: yes
- link: https://mediadive.dsmz.de/medium/711
- composition: Name: SPOROBACTER MEDIUM (DSMZ Medium 711) Composition: Na2CO3 1.49551 g/l trans-3,4,5-trimethoxycinnamate 1.18644 g/l NH4Cl 0.997009 g/l NaCl 0.598205 g/l Yeast extract 0.498504 g/l Na-acetate x 3 H2O 0.498504 g/l K2HPO4 0.299103 g/l KH2PO4 0.299103 g/l L-Cysteine HCl x H2O 0.299103 g/l Na2S x 9 H2O 0.299103 g/l MgCl2 x 6 H2O 0.199402 g/l CaCl2 x 2 H2O 0.0997009 g/l KCl 0.0997009 g/l HCl 0.00373878 g/l FeCl2 x 4 H2O 0.00224327 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000284148 g/l MnCl2 x 4 H2O 0.000149551 g/l ZnCl2 0.000104686 g/l Pyridoxine hydrochloride 9.97009e-05 g/l Na2MoO4 x 2 H2O 5.38385e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l NiCl2 x 6 H2O 3.58923e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 8.97308e-06 g/l CuCl2 x 2 H2O 2.99103e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 3793
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 3793 | anaerobe | |
| 69480 | anaerobe | 99.649 |
spore formation
- @ref: 69481
- spore formation: no
- confidence: 96
Isolation, sampling and environmental information
isolation
- @ref: 3793
- sample type: wood-feeding termite Nasutitermes lujae
- host species: Nasutitermes lujae
- country: Cameroon
- origin.country: CMR
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Arthropoda | #Insecta |
| #Host Body Product | #Plant | #Timber |
Safety information
risk assessment
- @ref: 3793
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 3793
- description: T.aceticus gene for 16S ribosomal RNA
- accession: Z49863
- length: 1507
- database: ena
- NCBI tax ID: 44749
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sporobacter termitidis DSM 10068 | GCA_900130065 | scaffold | ncbi | 1123282 |
| 66792 | Sporobacter termitidis DSM 10068 | 1123282.4 | wgs | patric | 1123282 |
| 66792 | Sporobacter termitidis DSM 10068 | 2585428085 | draft | img | 1123282 |
GC content
- @ref: 3793
- GC-content: 57
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 96 | no |
| motile | yes | 82.762 | no |
| flagellated | no | 75.015 | no |
| gram-positive | no | 51.134 | no |
| anaerobic | yes | 99.167 | yes |
| aerobic | no | 97.128 | no |
| halophile | no | 95.626 | no |
| spore-forming | yes | 55.391 | no |
| thermophile | no | 98.053 | yes |
| glucose-util | yes | 75.553 | no |
| glucose-ferment | no | 58.522 | no |
External links
@ref: 3793
culture collection no.: DSM 10068
straininfo link
- @ref: 86678
- straininfo: 48743
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3793 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10068) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10068 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 86678 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48743.1 | StrainInfo: A central database for resolving microbial strain identifiers |