Strain identifier

BacDive ID: 17675

Type strain: Yes

Species: Acetivibrio ethanolgignens

Strain Designation: 77-6

Culture col. no.: DSM 3005, ATCC 33324

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General

@ref: 1269

BacDive-ID: 17675

DSM-Number: 3005

keywords: animal pathogen, mesophilic, anaerobe, Bacteria, 16S sequence, genome sequence

description: Acetivibrio ethanolgignens 77-6 is an anaerobe, mesophilic animal pathogen that was isolated from colon of pig with dysentery.

strain history: <- ATCC <- I.M. Robinson, 77-6

doi: 10.13145/bacdive17675.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Clostridia
  • order: Eubacteriales
  • family: Oscillospiraceae
  • genus: Acetivibrio
  • species: Acetivibrio ethanolgignens
  • full scientific name: Acetivibrio ethanolgignens Robinson and Ritchie 1981

@ref: 1269

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Hungateiclostridiaceae

genus: Acetivibrio

species: Acetivibrio ethanolgignens

full scientific name: Acetivibrio ethanolgignens Robinson and Ritchie 1981

strain designation: 77-6

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1269
  • name: PYG MEDIUM WITH VOLATILE FATTY ACIDS (DSMZ Medium 328), anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium328.pdf

culture temp

  • @ref: 1269
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1269
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 1269
  • sample type: colon of pig with dysentery

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Gastrointestinal tract#Large intestine

Safety information

risk assessment

  • @ref: 1269
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 1269
  • description: Acetivibrio ethanolgignens partial 16S rRNA gene, type strain DSM 3005T
  • accession: FR749897
  • length: 1529
  • database: ena
  • NCBI tax ID: 290052

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetivibrio ethanolgignens ACET-33324GCA_001461035scaffoldncbi290052
66792Acetivibrio ethanolgignens MGYG-HGUT-02464GCA_902387445scaffoldncbi290052
66792Acetivibrio ethanolgignens strain ACET-33324290052.5wgspatric290052
66792Acetivibrio ethanolgignens strain MGYG-HGUT-02464290052.6wgspatric290052

GC content

  • @ref: 1269
  • GC-content: 40.0

External links

@ref: 1269

culture collection no.: DSM 3005, ATCC 33324

straininfo link

@refpassport
20218http://www.straininfo.net/strains/3
20218http://www.straininfo.net/strains/2

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1269Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3005)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3005
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)