Strain identifier
BacDive ID: 17669
Type strain: 
Species: Methanocella conradii
Strain Designation: HZ254
Strain history: <- L. YaHai, China Agric. Univ., College Resources and Environmental Scs., Beijing; HZ254 <- Z. Lü
NCBI tax ID(s): 1175444 (species)
version 8.1 (current version)
General
@ref: 17731
BacDive-ID: 17669
DSM-Number: 24694
keywords: genome sequence, 16S sequence, Archaea, anaerobe
description: Methanocella conradii HZ254 is an anaerobe archaeon that was isolated from rice paddies.
NCBI tax id
- NCBI tax id: 1175444
- Matching level: species
strain history
- @ref: 17731
- history: <- L. YaHai, China Agric. Univ., College Resources and Environmental Scs., Beijing; HZ254 <- Z. Lü
doi: 10.13145/bacdive17669.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanomicrobia
- order: Methanocellales
- family: Methanocellaceae
- genus: Methanocella
- species: Methanocella conradii
- full scientific name: Methanocella conradii Lü and Lu 2012
@ref: 17731
domain: Archaea
phylum: Euryarchaeota
class: Methanomicrobia
order: Methanocellales
family: Methanocellaceae
genus: Methanocella
species: Methanocella conradii
full scientific name: Methanocella conradii Lü and Lu 2012
strain designation: HZ254
type strain: yes
Morphology
colony morphology
- @ref: 17731
- incubation period: 3-7 days
Physiology and metabolism
oxygen tolerance
- @ref: 17731
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 17731
- sample type: rice paddies
- geographic location: Hangzhou, China National Rice Res. Institute
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
Safety information
risk assessment
- @ref: 17731
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17731
- description: Methanocella conradii HZ254 16S ribosomal RNA gene, partial sequence
- accession: JN048683
- length: 1422
- database: ena
- NCBI tax ID: 1041930
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Methanocella conradii HZ254 | GCA_000251105 | complete | ncbi | 1041930 |
| 66792 | Methanocella conradii HZ254 | 2512564055 | complete | img | 1041930 |
| 66792 | Methanocella conradii HZ254 | 1041930.6 | complete | patric | 1041930 |
GC content
- @ref: 17731
- GC-content: 52.7
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 89.515 | no |
| flagellated | no | 97.77 | no |
| gram-positive | no | 95.9 | no |
| anaerobic | yes | 98.778 | yes |
| aerobic | no | 96.422 | no |
| halophile | no | 87.036 | no |
| spore-forming | no | 95.653 | no |
| glucose-util | yes | 69.528 | no |
| thermophile | yes | 92.099 | no |
| glucose-ferment | no | 63.489 | no |
External links
@ref: 17731
culture collection no.: DSM 24694, CGMCC 1.5162, JCM 17849
straininfo link
- @ref: 86660
- straininfo: 401278
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Genetics | 22493204 | Complete genome sequence of a thermophilic methanogen, Methanocella conradii HZ254, isolated from Chinese rice field soil. | Lu Z, Lu Y | J Bacteriol | 10.1128/JB.00207-12 | 2012 | Agriculture, Archaea/*genetics, China, Gene Expression Regulation, Archaeal/physiology, *Genome, Archaeal, Molecular Sequence Data, *Oryza, *Soil Microbiology | |
| Phylogeny | 22530002 | Methanocella conradii sp. nov., a thermophilic, obligate hydrogenotrophic methanogen, isolated from Chinese rice field soil. | Lu Z, Lu Y | PLoS One | 10.1371/journal.pone.0035279 | 2012 | Base Composition, DNA Restriction Enzymes/genetics, Methanomicrobiaceae/classification/*genetics/growth & development/ultrastructure, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S, *Soil Microbiology | Genetics |
| Metabolism | 24837392 | Response of a rice paddy soil methanogen to syntrophic growth as revealed by transcriptional analyses. | Liu P, Yang Y, Lu Z, Lu Y | Appl Environ Microbiol | 10.1128/AEM.01259-14 | 2014 | Archaeal Proteins/genetics/metabolism, Euryarchaeota/enzymology/*genetics/growth & development/isolation & purification, Formate Dehydrogenases/genetics/metabolism, Hydrogenase/genetics/metabolism, Methane/*metabolism, Oryza/growth & development, Oxidoreductases/genetics/metabolism, Soil/chemistry, *Soil Microbiology, *Transcription, Genetic | Enzymology |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 17731 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24694) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24694 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 86660 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401278.1 | StrainInfo: A central database for resolving microbial strain identifiers |