Strain identifier
BacDive ID: 17657
Type strain: 
Species: Methermicoccus shengliensis
Strain Designation: ZC-1
Strain history: <- L. Cheng and H. Zhang, Biogas Inst. of Ministry of Agriculture, Chengdu, P.R. China; ZC-1 {2006} <- L. Cheng {2005}
NCBI tax ID(s): 1122233 (strain), 660064 (species)
version 8.1 (current version)
General
@ref: 7746
BacDive-ID: 17657
DSM-Number: 18856
keywords: genome sequence, 16S sequence, Archaea, anaerobe, thermophilic
description: Methermicoccus shengliensis ZC-1 is an anaerobe, thermophilic archaeon that was isolated from oil-production water.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1122233 | strain |
| 660064 | species |
strain history
- @ref: 7746
- history: <- L. Cheng and H. Zhang, Biogas Inst. of Ministry of Agriculture, Chengdu, P.R. China; ZC-1 {2006} <- L. Cheng {2005}
doi: 10.13145/bacdive17657.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanomicrobia
- order: Methanosarcinales
- family: Methermicoccaceae
- genus: Methermicoccus
- species: Methermicoccus shengliensis
- full scientific name: Methermicoccus shengliensis Cheng et al. 2007
@ref: 7746
domain: Archaea
phylum: Euryarchaeota
class: Methanomicrobia
order: Methanosarcinales
family: Methermicoccaceae
genus: Methermicoccus
species: Methermicoccus shengliensis
full scientific name: Methermicoccus shengliensis Cheng et al. 2007
strain designation: ZC-1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7746
- name: METHERMICOCCUS (METHANOGEN) MEDIUM (DSMZ Medium 1084)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1084
- composition: Name: METHERMICOCCUS (METHANOGEN) MEDIUM (DSMZ Medium 1084) Composition: NaCl 23.5064 g/l Methanol 12.4114 g/l MgCl2 x 6 H2O 9.99021 g/l 2-Mercaptoethanesulfonic acid 2.44858 g/l Na2CO3 0.979432 g/l KCl 0.333007 g/l L-Cysteine HCl x H2O 0.29383 g/l Na2S x 9 H2O 0.29383 g/l NH4Cl 0.244858 g/l K2HPO4 0.195886 g/l Yeast extract 0.0195886 g/l Sodium resazurin 0.000489716 g/l Sludge Distilled water
culture temp
- @ref: 7746
- growth: positive
- type: growth
- temperature: 65
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 7746
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 7746
- sample type: oil-production water
- geographic location: Shengli oilfield
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Oil reservoir |
| #Environmental | #Aquatic |
taxonmaps
- @ref: 69479
- File name: preview.99_187223.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18016;96_68875;97_89522;98_121803;99_187223&stattab=map
- Last taxonomy: Methermicoccus shengliensis subclade
- 16S sequence: DQ787474
- Sequence Identity:
- Total samples: 65
- soil counts: 2
- aquatic counts: 62
- plant counts: 1
Safety information
risk assessment
- @ref: 7746
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7746
- description: Methermicoccus shengliensis strain ZC-1 16S ribosomal RNA gene, partial sequence
- accession: DQ787474
- length: 1346
- database: ena
- NCBI tax ID: 660064
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Methermicoccus shengliensis DSM 18856 | GCA_000711905 | scaffold | ncbi | 1122233 |
| 66792 | Methermicoccus shengliensis DSM 18856 | 2565956510 | draft | img | 1122233 |
| 66792 | Methermicoccus shengliensis DSM 18856 | 1122233.4 | wgs | patric | 1122233 |
GC content
- @ref: 7746
- GC-content: 56
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 86.439 | no |
| flagellated | no | 96.082 | no |
| gram-positive | no | 95.542 | no |
| anaerobic | yes | 98.588 | yes |
| halophile | no | 84.254 | no |
| spore-forming | no | 95.807 | no |
| thermophile | yes | 99.219 | yes |
| glucose-util | yes | 74.609 | no |
| aerobic | no | 95.261 | yes |
| glucose-ferment | no | 61.522 | no |
External links
@ref: 7746
culture collection no.: DSM 18856, CGMCC 1.5056
straininfo link
- @ref: 86648
- straininfo: 406207
literature
- topic: Phylogeny
- Pubmed-ID: 18048758
- title: Methermicoccus shengliensis gen. nov., sp. nov., a thermophilic, methylotrophic methanogen isolated from oil-production water, and proposal of Methermicoccaceae fam. nov.
- authors: Cheng L, Qiu TL, Yin XB, Wu XL, Hu GQ, Deng Y, Zhang H
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65049-0
- year: 2007
- mesh: Acetic Acid/metabolism, Archaea/*classification/genetics/*isolation & purification/metabolism, Base Composition, China, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Hydrogen-Ion Concentration, Magnesium Chloride/metabolism, Methane/*biosynthesis, Methanol/*metabolism, Methanosarcinales/genetics, Methylamines/metabolism, Microscopy, Electron, Microscopy, Phase-Contrast, Molecular Sequence Data, Petroleum, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Temperature, *Water Microbiology
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7746 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18856) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18856 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 86648 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406207.1 | StrainInfo: A central database for resolving microbial strain identifiers |