Strain identifier

BacDive ID: 17636

Type strain: Yes

Species: Catenulispora acidiphila

Strain Designation: ID 139908

Culture col. no.: DSM 44928, NRRL B-24433

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General

@ref: 12201

BacDive-ID: 17636

DSM-Number: 44928

keywords: mesophilic, spore-forming, aerobe, Bacteria, 16S sequence, genome sequence, gram-positive, rod-shaped

description: Catenulispora acidiphila ID 139908 is an aerobe, spore-forming, mesophilic bacterium that was isolated from forest soil.

strain history: <- L. Cavaletti <- E. Busti; ID 139908

doi: 10.13145/bacdive17636.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Catenulisporales
  • family: Catenulisporaceae
  • genus: Catenulispora
  • species: Catenulispora acidiphila
  • full scientific name: Catenulispora acidiphila Busti et al. 2006

@ref: 12201

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Catenulisporaceae

genus: Catenulispora

species: Catenulispora acidiphila

full scientific name: Catenulispora acidiphila Busti et al. 2006 emend. Nouioui et al. 2018

strain designation: ID 139908

type strain: yes

Morphology

cell morphology

  • @ref: 31588
  • gram stain: positive
  • cell length: 0.4-1 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: no

multimedia

  • @ref: 12201
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44928.jpg
  • caption: Medium 65 pH5.5 28°C
  • license or copyright: (C) Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
  • intellectual property rights: © Leibniz-Institut DSMZ

pigmentation

@refproductioncolorname
31588yes
27877yesbrown and whitebrownisch whitish, turning yellow/green with ageing

Culture and growth conditions

culture medium

@refnamegrowthlink
12201GYM STREPTOMYCES MEDIUM (DSMZ Medium 65), pH5.5yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf
12201ISP2 MEDIUM (DSMZ Medium 987), pH5.5yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium987.pdf
33295MEDIUM 688 for Catenulispora acidiphilayes

culture temp

@refgrowthtypetemperaturerange
12201positivegrowth28mesophilic
31588positivegrowth11-37
31588positiveoptimum22-28
33295positivegrowth30mesophilic
27877nogrowth4psychrophilic
27877nogrowth40thermophilic

culture pH

@refabilitytypepH
31588positivegrowth4.3-6.8
31588positiveoptimum6

Physiology and metabolism

tolerance

  • @ref: 27877
  • compound: Lysozyme
  • concentration: 100.0 µg/ml

oxygen tolerance

  • @ref: 31588
  • oxygen tolerance: aerobe

spore formation

@refspore formationspore descriptiontype of spore
31588yes
27877yesspore surface is rugose, produce chains of more than 20 cylindrical arthrosporesarthrospore

halophily

@refsaltgrowthtested relationconcentration
31588NaClpositivegrowth0-3 %
31588NaClpositiveoptimum0-3 %

observation

  • @ref: 31588
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3158822599arabinose+carbon source
3158828757fructose+carbon source
3158817234glucose+carbon source
3158817754glycerol+carbon source
3158829864mannitol+carbon source
3158818222xylose+carbon source
27877casein+hydrolysis
2787762968cellulose-assimilation
278775291gelatin+hydrolysis
2787717268myo-inositol-assimilation
2787717632nitrate-reduction
2787726546rhamnose-assimilation
2787728017starch+hydrolysis
2787717992sucrose-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
2787728368novobiocinyesyes10 µg/mL
2787729670ramoplaninyesyes10 µg/mL
2787729693thiostreptonyesyes10 µg/mL
278772790apramycinyesyes10 µg/mL
2787741977daunorubicinyesyes10 µg/mL
278776104kanamycinyesyes10 µg/mL
27877100147nalidixic acidyesyes10 µg/mL
2787771629nisinyesyes10 µg/mL
278777809oxacillinyesyes10 µg/mL
2787728077rifampicinyesyes10 µg/mL

metabolite production

  • @ref: 31588
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

  • @ref: 31588
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
19890----------+--------

Isolation, sampling and environmental information

isolation

  • @ref: 12201
  • sample type: forest soil
  • geographic location: Gerenzano
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
122011Risk group (German classification)
198901Risk group (German classification)

Sequence information

16S sequences

  • @ref: 12201
  • description: Catenulispora acidiphila partial 16S rRNA gene, type strain ID139908T
  • accession: AJ865857
  • length: 1441
  • database: ena
  • NCBI tax ID: 479433

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Catenulispora acidiphila DSM 44928GCA_000024025completencbi479433
66792Catenulispora acidiphila DSM 44928479433.5completepatric479433
66792Catenulispora acidiphila ID139908, DSM 44928644736339completeimg479433

GC content

@refGC-content
1220171.9
3158871.5

External links

@ref: 12201

culture collection no.: DSM 44928, NRRL B-24433

straininfo link

@refpassport
20218http://www.straininfo.net/strains/685605
20218http://www.straininfo.net/strains/685604

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
12201Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44928)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44928
19890Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM44928.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2787710.1099/ijs.0.63858-0
31588Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information27877
33295Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7116
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)