Strain identifier

BacDive ID: 17615

Type strain: No

Species: Xanthomonas hortorum

Strain history: <- NCPPB <- D. Sutic

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7925

BacDive-ID: 17615

DSM-Number: 19127

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, plant pathogen

description: Xanthomonas hortorum DSM 19127 is a mesophilic plant pathogen that was isolated from Lysopersicon esculentum.

strain history

  • @ref: 7925
  • history: <- NCPPB <- D. Sutic

doi: 10.13145/bacdive17615.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Xanthomonas
  • species: Xanthomonas hortorum
  • full scientific name: Xanthomonas hortorum Vauterin et al. 1995
  • synonyms

    @refsynonym
    20215Xanthomonas cynarae
    20215Xanthomonas gardneri

@ref: 7925

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Lysobacteraceae

genus: Xanthomonas

species: Xanthomonas cynarae

full scientific name: Xanthomonas cynarae Trébaol et al. 2000 emend. Timilsina et al. 2019

type strain: no

Culture and growth conditions

culture medium

  • @ref: 7925
  • name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1a
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 7925
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 7925
  • sample type: Lysopersicon esculentum
  • host species: Lysopersicon esculentum
  • country: Yugoslavia
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_92.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
  • Last taxonomy: Xanthomonas
  • 16S sequence: FR749911
  • Sequence Identity:
  • Total samples: 52152
  • soil counts: 10026
  • aquatic counts: 6826
  • animal counts: 28252
  • plant counts: 7048

Safety information

risk assessment

  • @ref: 7925
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Xanthomonas gardneri partial 16S rRNA gene, type strain DSM 19127T
  • accession: FR749911
  • length: 1537
  • database: ena
  • NCBI tax ID: 90270

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Xanthomonas hortorum ATCC 19865GCA_000192065contigncbi925777
66792Xanthomonas gardneri ATCC 19865925777.8wgspatric925777
66792Xanthomonas gardneri PDDCC 1620, ATCC 19865651324109draftimg925777

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes81.796no
flagellatedno85.41no
gram-positiveno97.773no
anaerobicno99.308no
halophileno93.829no
spore-formingno95.367no
thermophileno99.537yes
glucose-utilyes92.359no
aerobicyes95.099no
glucose-fermentno90.025no

External links

@ref: 7925

culture collection no.: DSM 19127, ATCC 19865, NCPPB 881

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7925Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19127)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19127
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta