Strain identifier
BacDive ID: 17615
Type strain:
Species: Xanthomonas hortorum
Strain history: <- NCPPB <- D. Sutic
version 8.1 (current version)
General
@ref: 7925
BacDive-ID: 17615
DSM-Number: 19127
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, plant pathogen
description: Xanthomonas hortorum DSM 19127 is a mesophilic plant pathogen that was isolated from Lysopersicon esculentum.
strain history
- @ref: 7925
- history: <- NCPPB <- D. Sutic
doi: 10.13145/bacdive17615.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Xanthomonas
- species: Xanthomonas hortorum
- full scientific name: Xanthomonas hortorum Vauterin et al. 1995
synonyms
@ref synonym 20215 Xanthomonas cynarae 20215 Xanthomonas gardneri
@ref: 7925
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Lysobacteraceae
genus: Xanthomonas
species: Xanthomonas cynarae
full scientific name: Xanthomonas cynarae Trébaol et al. 2000 emend. Timilsina et al. 2019
type strain: no
Culture and growth conditions
culture medium
- @ref: 7925
- name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1a
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 7925
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 7925
- sample type: Lysopersicon esculentum
- host species: Lysopersicon esculentum
- country: Yugoslavia
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
taxonmaps
- @ref: 69479
- File name: preview.99_92.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
- Last taxonomy: Xanthomonas
- 16S sequence: FR749911
- Sequence Identity:
- Total samples: 52152
- soil counts: 10026
- aquatic counts: 6826
- animal counts: 28252
- plant counts: 7048
Safety information
risk assessment
- @ref: 7925
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Xanthomonas gardneri partial 16S rRNA gene, type strain DSM 19127T
- accession: FR749911
- length: 1537
- database: ena
- NCBI tax ID: 90270
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Xanthomonas hortorum ATCC 19865 | GCA_000192065 | contig | ncbi | 925777 |
66792 | Xanthomonas gardneri ATCC 19865 | 925777.8 | wgs | patric | 925777 |
66792 | Xanthomonas gardneri PDDCC 1620, ATCC 19865 | 651324109 | draft | img | 925777 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 81.796 | no |
flagellated | no | 85.41 | no |
gram-positive | no | 97.773 | no |
anaerobic | no | 99.308 | no |
halophile | no | 93.829 | no |
spore-forming | no | 95.367 | no |
thermophile | no | 99.537 | yes |
glucose-util | yes | 92.359 | no |
aerobic | yes | 95.099 | no |
glucose-ferment | no | 90.025 | no |
External links
@ref: 7925
culture collection no.: DSM 19127, ATCC 19865, NCPPB 881
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
7925 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19127) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19127 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |