Strain identifier
BacDive ID: 17613
Type strain: 
Species: Xanthomonas euvesicatoria
Strain history: <- NCPPB <- D. W. Dye
NCBI tax ID(s): 456327 (species)
version 8.1 (current version)
General
@ref: 7926
BacDive-ID: 17613
DSM-Number: 19128
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, plant pathogen
description: Xanthomonas euvesicatoria DSM 19128 is a mesophilic plant pathogen that was isolated from Capsicum frutescens.
NCBI tax id
- NCBI tax id: 456327
- Matching level: species
strain history
- @ref: 7926
- history: <- NCPPB <- D. W. Dye
doi: 10.13145/bacdive17613.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Xanthomonas
- species: Xanthomonas euvesicatoria
- full scientific name: Xanthomonas euvesicatoria Jones et al. 2006
synonyms
@ref synonym 20215 Xanthomonas alfalfae 20215 Xanthomonas perforans
@ref: 7926
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Lysobacteraceae
genus: Xanthomonas
species: Xanthomonas euvesicatoria
full scientific name: Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7926
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 7926
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 7926
- sample type: Capsicum frutescens
- host species: Capsicum frutescens
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
taxonmaps
- @ref: 69479
- File name: preview.99_92.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
- Last taxonomy: Xanthomonas
- 16S sequence: FR733718
- Sequence Identity:
- Total samples: 52152
- soil counts: 10026
- aquatic counts: 6826
- animal counts: 28252
- plant counts: 7048
Safety information
risk assessment
- @ref: 7926
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Xanthomonas euvesicatoria strain XV 25 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ala and tRNA-Ile genes, complete sequence; and 23S ribosomal RNA gene, partial sequence | KF876018 | 1046 | ena | 456327 |
| 20218 | Xanthomonas euvesicatoria partial 16S rRNA gene, type strain DSM19128T | FR733718 | 1535 | ena | 456327 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Xanthomonas euvesicatoria LMG 27970 | GCA_001401555 | contig | ncbi | 456327 |
| 66792 | Xanthomonas euvesicatoria strain LMG 27970 | 456327.28 | wgs | patric | 456327 |
| 66792 | Xanthomonas euvesicatoria LMG 27970 | 2645727737 | draft | img | 456327 |
| 66792 | Xanthomonas euvesicatoria pv. euvesicatoria ATCC 11633 | GCA_020880415 | contig | ncbi | 2753541 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | no | 97.858 | no |
| anaerobic | no | 98.942 | no |
| halophile | no | 94.484 | no |
| spore-forming | no | 95.636 | no |
| glucose-util | yes | 93.541 | no |
| aerobic | yes | 95.073 | no |
| flagellated | no | 85.414 | no |
| thermophile | no | 99.158 | yes |
| motile | yes | 81.272 | no |
| glucose-ferment | no | 89.242 | no |
External links
@ref: 7926
culture collection no.: DSM 19128, ATCC 11633, LMG 27970, NCPPB 2968
straininfo link
- @ref: 86606
- straininfo: 35399
literature
- Pubmed-ID: 30743604
- title: A New Type of Strain of Xanthomonas euvesicatoria Causing Bacterial Spot of Tomato and Pepper in Grenada.
- authors: Hamza AA, Robene-Soustrade I, Boyer C, Laurent A, Jouen E, Wicker E, Prior P, Pruvost O, Dottin M
- journal: Plant Dis
- DOI: 10.1094/PDIS-05-10-0397
- year: 2010
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 7926 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19128) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19128 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 86606 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID35399.1 | StrainInfo: A central database for resolving microbial strain identifiers |