Strain identifier

BacDive ID: 17613

Type strain: Yes

Species: Xanthomonas euvesicatoria

Strain history: <- NCPPB <- D. W. Dye

NCBI tax ID(s): 456327 (species)

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General

@ref: 7926

BacDive-ID: 17613

DSM-Number: 19128

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, plant pathogen

description: Xanthomonas euvesicatoria DSM 19128 is a mesophilic, Gram-negative plant pathogen that was isolated from Capsicum frutescens.

NCBI tax id

  • NCBI tax id: 456327
  • Matching level: species

strain history

  • @ref: 7926
  • history: <- NCPPB <- D. W. Dye

doi: 10.13145/bacdive17613.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Xanthomonas
  • species: Xanthomonas euvesicatoria
  • full scientific name: Xanthomonas euvesicatoria Jones et al. 2006

  • synonyms

    @refsynonym
    20215Xanthomonas alfalfae
    20215Xanthomonas perforans

@ref: 7926

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Lysobacteraceae

genus: Xanthomonas

species: Xanthomonas euvesicatoria

full scientific name: Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016

type strain: yes

Morphology

cell morphology

@refgram stainconfidence
125438negative98
125439negative96.6

Culture and growth conditions

culture medium

  • @ref: 7926
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 7926
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

oxygen tolerance

  • @ref: 125439
  • oxygen tolerance: obligate aerobe
  • confidence: 99.6

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 95.3

Isolation, sampling and environmental information

isolation

  • @ref: 7926
  • sample type: Capsicum frutescens
  • host species: Capsicum frutescens
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_92.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
  • Last taxonomy: Xanthomonas
  • 16S sequence: FR733718
  • Sequence Identity:
  • Total samples: 52152
  • soil counts: 10026
  • aquatic counts: 6826
  • animal counts: 28252
  • plant counts: 7048

Safety information

risk assessment

  • @ref: 7926
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Xanthomonas euvesicatoria strain XV 25 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ala and tRNA-Ile genes, complete sequence; and 23S ribosomal RNA gene, partial sequenceKF8760181046nuccore456327
20218Xanthomonas euvesicatoria partial 16S rRNA gene, type strain DSM19128TFR7337181535nuccore456327

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Xanthomonas euvesicatoria LMG 27970GCA_001401555contigncbi456327
66792Xanthomonas euvesicatoria strain LMG 27970456327.28wgspatric456327
66792Xanthomonas euvesicatoria LMG 279702645727737draftimg456327
66792Xanthomonas euvesicatoria pv. euvesicatoria ATCC 11633GCA_020880415contigncbi2753541

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno98no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.837no
125438spore-formingspore-formingAbility to form endo- or exosporesno89.269no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes88.078no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno99.91no
125438motile2+flagellatedAbility to perform flagellated movementyes70.714no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno95.3
125439BacteriaNetmotilityAbility to perform movementyes72.7
125439BacteriaNetgram_stainReaction to gram-stainingnegative96.6
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe99.6

External links

@ref: 7926

culture collection no.: DSM 19128, ATCC 11633, LMG 27970, NCPPB 2968

straininfo link

  • @ref: 86606
  • straininfo: 35399

literature

  • Pubmed-ID: 30743604
  • title: A New Type of Strain of Xanthomonas euvesicatoria Causing Bacterial Spot of Tomato and Pepper in Grenada.
  • authors: Hamza AA, Robene-Soustrade I, Boyer C, Laurent A, Jouen E, Wicker E, Prior P, Pruvost O, Dottin M
  • journal: Plant Dis
  • DOI: 10.1094/PDIS-05-10-0397
  • year: 2010

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7926Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19128)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19128
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86606Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID35399.1StrainInfo: A central database for resolving microbial strain identifiers
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1