Archive BacDiveID:10.13145/bacdive17611.20221219.7.1

Strain identifier

BacDive ID: 17611

Type strain:

Species: Xanthomonas theicola

Strain history: <- CFBP <- ICMP <- K. Uehara

NCBI tax ID(s): 56464 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 7703

BacDive-ID: 17611

DSM-Number: 18797

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, plant pathogen

description: Xanthomonas theicola DSM 18797 is a mesophilic plant pathogen that was isolated from Camiella sinensis.

NCBI tax id

NCBI tax id: 56464
Matching level: species

strain history: <- CFBP <- ICMP <- K. Uehara

doi: 10.13145/bacdive17611.20221219.7.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Lysobacterales
family: Lysobacteraceae
genus: Xanthomonas
species: Xanthomonas theicola
full scientific name: Xanthomonas theicola Vauterin et al. 1995

@ref: 7703

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Lysobacteraceae

genus: Xanthomonas

species: Xanthomonas theicola

full scientific name: Xanthomonas theicola Vauterin et al. 1995

type strain: yes

Morphology

cell morphology

@ref: 69480
gram stain: negative
confidence: 99.587

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
7703	REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)	yes	https://mediadive.dsmz.de/medium/830c	Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
7703	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)	yes	https://mediadive.dsmz.de/medium/1a	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@ref: 7703
growth: positive
type: growth
temperature: 30
range: mesophilic

Physiology and metabolism

spore formation

@ref: 69480
spore formation: no
confidence: 98.283

halophily

@ref: 69480
halophily level: non-halophilic
confidence: 95.977

Isolation, sampling and environmental information

isolation

@ref: 7703
sample type: Camiella sinensis
host species: Camellia sinensis
geographic location: Chinan-cho
country: Japan
origin.country: JPN
continent: Asia

isolation source categories

Cat1: #Host
Cat2: #Plants
Cat3: #Shrub (Scrub)

Safety information

risk assessment

@ref: 7703
pathogenicity plant: yes
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Xanthomonas theicola gene for 16S rRNA, partial sequence, strain: LMG 8684	AB558557	1421	ena	56464
20218	Xanthomonas theicola strain LMG8684 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF209763	541	ena	56464
7703	X.theicola 16S rRNA gene	Y10763	1502	ena	56464

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Xanthomonas theicola CFBP 4691	GCA_014236795	complete	ncbi	56464
66792	Xanthomonas theicola CFBP 4691	GCA_002940605	contig	ncbi	56464
66792	Xanthomonas theicola strain CFBP 4691	56464.5	complete	patric	56464
66792	Xanthomonas theicola strain CFBP 4691	56464.3	wgs	patric	56464
66792	Xanthomonas theicola CFBP 4691	2878098136	draft	img	56464

External links

@ref: 7703

culture collection no.: DSM 18797, CFBP 4691, ICMP 6774, LMG 8684

straininfo link

@ref	passport
20218	http://www.straininfo.net/strains/701878
20218	http://www.straininfo.net/strains/763789
20218	http://www.straininfo.net/strains/25950
20218	http://www.straininfo.net/strains/25949

literature

topic: Genetics
Pubmed-ID: 32997607
title: The Complete Genome Sequence of Xanthomonas theicola, the Causal Agent of Canker on Tea Plants, Reveals Novel Secretion Systems in Clade-1 Xanthomonads.
authors: Koebnik R, Burokiene D, Bragard C, Chang C, Saux MF, Kolliker R, Lang JM, Leach JE, Luna EK, Portier P, Sagia A, Ziegle J, Cohen SP, Jacobs JM
journal: Phytopathology
DOI: 10.1094/PHYTO-07-20-0273-SC
year: 2021
mesh: *Genome, Bacterial/genetics, Phylogeny, Plant Diseases, Tea, *Xanthomonas/genetics
topic2: Phylogeny

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
7703	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18797)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-18797
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)