Strain identifier
BacDive ID: 17608
Type strain:
Species: Xanthomonas cucurbitae
Strain Designation: E78, VdM
Strain history: <- NCPPB <- D. R. W. Watson; E78
NCBI tax ID(s): 56453 (species)
General
@ref: 7803
BacDive-ID: 17608
DSM-Number: 18957
keywords: 16S sequence, Bacteria, mesophilic, plant pathogen
description: Xanthomonas cucurbitae E78 is a mesophilic plant pathogen that was isolated from Cucurbita maxima, leaf lesion.
NCBI tax id
- NCBI tax id: 56453
- Matching level: species
strain history
- @ref: 7803
- history: <- NCPPB <- D. R. W. Watson; E78
doi: 10.13145/bacdive17608.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Xanthomonas
- species: Xanthomonas cucurbitae
- full scientific name: Xanthomonas cucurbitae (ex Bryan 1926) Vauterin et al. 1995
@ref: 7803
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Lysobacteraceae
genus: Xanthomonas
species: Xanthomonas cucurbitae
full scientific name: Xanthomonas cucurbitae (ex Bryan 1926) Vauterin et al. 1995
strain designation: E78, VdM
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7803
- name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1a
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 7803
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 7803
- sample type: Cucurbita maxima, leaf lesion
- host species: Cucurbita maxima
- country: New Zealand
- origin.country: NZL
- continent: Australia and Oceania
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Other | #Wound |
#Host Body-Site | #Plant | #Leaf (Phyllosphere) |
taxonmaps
- @ref: 69479
- File name: preview.99_92.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
- Last taxonomy: Xanthomonas
- 16S sequence: Y10760
- Sequence Identity:
- Total samples: 52152
- soil counts: 10026
- aquatic counts: 6826
- animal counts: 28252
- plant counts: 7048
Safety information
risk assessment
- @ref: 7803
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Xanthomonas cucurbitae strain LMG690 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF209757 | 501 | ena | 56453 |
20218 | Xanthomonas cucurbitae clone K0871 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence | HM181886 | 558 | ena | 56453 |
7803 | X.cucurbitae 16S rRNA gene | Y10760 | 1502 | ena | 56453 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 94.167 | no |
flagellated | no | 96.502 | no |
gram-positive | yes | 95.102 | no |
anaerobic | no | 93.349 | no |
aerobic | no | 95.675 | no |
halophile | yes | 76.87 | no |
spore-forming | no | 91.587 | no |
glucose-util | yes | 85.484 | no |
thermophile | no | 99.038 | no |
glucose-ferment | yes | 83.068 | no |
External links
@ref: 7803
culture collection no.: DSM 18957, ICMP 2299, LMG 690, NCPPB 2597
straininfo link
- @ref: 86601
- straininfo: 5481
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 24170776 | Luteimonas abyssi sp. nov., isolated from deep-sea sediment. | Fan X, Yu T, Li Z, Zhang XH | Int J Syst Evol Microbiol | 10.1099/ijs.0.056010-0 | 2013 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Pacific Ocean, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry, Xanthomonadaceae/*classification/genetics/isolation & purification | Genetics |
30764408 | First Report of Xanthomonas cucurbitae Causing Bacterial Leaf Spot of Watermelon in the Seychelles. | Pruvost O, Robene-Soustrade I, Ah-You N, Jouen E, Boyer C, Wuster G, Hostachy B, Napoles C, Dogley W | Plant Dis | 10.1094/PDIS-93-6-0671B | 2009 | |||
30764465 | First Report of Xanthomonas cucurbitae Causing Bacterial Leaf Spot of Pumpkin on Reunion Island. | Pruvost O, Robene-Soustrade I, Ah-You N, Jouen E, Boyer C, Waller F, Hostachy B | Plant Dis | 10.1094/PDIS-92-11-1591A | 2008 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
7803 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18957) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18957 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
86601 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID5481.1 | StrainInfo: A central database for resolving microbial strain identifiers |