Archive BacDiveID:10.13145/bacdive17607.20221219.7.1

Strain identifier

BacDive ID: 17607

Type strain:

Species: Xanthomonas codiaei

Strain history: <- CFBP <- ICMP

NCBI tax ID(s): 56463 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 7712

BacDive-ID: 17607

DSM-Number: 18812

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, plant pathogen

description: Xanthomonas codiaei DSM 18812 is a mesophilic plant pathogen that was isolated from Codiacum variegatum.

NCBI tax id

NCBI tax id: 56463
Matching level: species

strain history: <- CFBP <- ICMP

doi: 10.13145/bacdive17607.20221219.7.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Lysobacterales
family: Lysobacteraceae
genus: Xanthomonas
species: Xanthomonas codiaei
full scientific name: Xanthomonas codiaei Vauterin et al. 1995

@ref: 7712

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Lysobacteraceae

genus: Xanthomonas

species: Xanthomonas codiaei

full scientific name: Xanthomonas codiaei Vauterin et al. 1995

type strain: yes

Morphology

cell morphology

@ref	motility	confidence	gram stain
69480	yes	67.871
69480		99.16	negative

Culture and growth conditions

culture medium

@ref: 7712
name: NUTRIENT AGAR (DSMZ Medium 1)
growth: yes
link: https://mediadive.dsmz.de/medium/1
composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@ref: 7712
growth: positive
type: growth
temperature: 28
range: mesophilic

Physiology and metabolism

spore formation

@ref: 69480
spore formation: no
confidence: 97.702

halophily

@ref: 69480
halophily level: non-halophilic
confidence: 98.844

Isolation, sampling and environmental information

isolation

@ref: 7712
sample type: Codiacum variegatum
host species: Codiacum variegatum
geographic location: Florida
country: USA
origin.country: USA
continent: North America

isolation source categories

Cat1: #Host
Cat2: #Plants
Cat3: #Shrub (Scrub)

Safety information

risk assessment

@ref: 7712
pathogenicity plant: yes
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Xanthomonas codiaei 16S ribosomal RNA gene, partial sequence and 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF260971	578	ena	56463
20218	Xanthomonas codiaei clone K0906 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence	HM181910	615	ena	56463
7712	X.codiaei 16S rRNA gene	Y10765	1502	ena	56463

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Xanthomonas codiaei CFBP4690	GCA_002939785	contig	ncbi	56463
66792	Xanthomonas codiaei strain CFBP4690	56463.3	wgs	patric	56463
66792	Xanthomonas codiaei CFBP4690	2880484841	draft	img	56463

External links

@ref: 7712

culture collection no.: DSM 18812, CFBP 4690, ICMP 9513, LMG 8678

straininfo link

@ref	passport
20218	http://www.straininfo.net/strains/691108
20218	http://www.straininfo.net/strains/691109
20218	http://www.straininfo.net/strains/25697
20218	http://www.straininfo.net/strains/25695

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
7712	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18812)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-18812
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)