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Strain identifier

BacDive ID: 17607

Type strain: Yes

Species: Xanthomonas codiaei

Strain history: <- CFBP <- ICMP

NCBI tax ID(s): 56463 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7712

BacDive-ID: 17607

DSM-Number: 18812

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, plant pathogen

description: Xanthomonas codiaei DSM 18812 is a mesophilic plant pathogen that was isolated from Codiacum variegatum.

NCBI tax id

  • NCBI tax id: 56463
  • Matching level: species

strain history: <- CFBP <- ICMP

doi: 10.13145/bacdive17607.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Xanthomonas
  • species: Xanthomonas codiaei
  • full scientific name: Xanthomonas codiaei Vauterin et al. 1995

@ref: 7712

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Lysobacteraceae

genus: Xanthomonas

species: Xanthomonas codiaei

full scientific name: Xanthomonas codiaei Vauterin et al. 1995

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes67.871
6948099.16negative

Culture and growth conditions

culture medium

  • @ref: 7712
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 7712
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.702

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 98.844

Isolation, sampling and environmental information

isolation

  • @ref: 7712
  • sample type: Codiacum variegatum
  • host species: Codiacum variegatum
  • geographic location: Florida
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Shrub (Scrub)

Safety information

risk assessment

  • @ref: 7712
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Xanthomonas codiaei 16S ribosomal RNA gene, partial sequence and 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF260971578ena56463
20218Xanthomonas codiaei clone K0906 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequenceHM181910615ena56463
7712X.codiaei 16S rRNA geneY107651502ena56463

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Xanthomonas codiaei CFBP4690GCA_002939785contigncbi56463
66792Xanthomonas codiaei strain CFBP469056463.3wgspatric56463
66792Xanthomonas codiaei CFBP46902880484841draftimg56463

External links

@ref: 7712

culture collection no.: DSM 18812, CFBP 4690, ICMP 9513, LMG 8678

straininfo link

@refpassport
20218http://www.straininfo.net/strains/691108
20218http://www.straininfo.net/strains/691109
20218http://www.straininfo.net/strains/25697
20218http://www.straininfo.net/strains/25695

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7712Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18812)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18812
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)