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Strain identifier

BacDive ID: 17605

Type strain: Yes

Species: Xanthomonas bromi

Strain history: <- CFBP <- LMG <- L. Vauterin, Ghent <- R. Samson

NCBI tax ID(s): 56449 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7638

BacDive-ID: 17605

DSM-Number: 18804

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, plant pathogen

description: Xanthomonas bromi DSM 18804 is a mesophilic plant pathogen that was isolated from Bromus carinatus.

NCBI tax id

  • NCBI tax id: 56449
  • Matching level: species

strain history: <- CFBP <- LMG <- L. Vauterin, Ghent <- R. Samson

doi: 10.13145/bacdive17605.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Xanthomonas
  • species: Xanthomonas bromi
  • full scientific name: Xanthomonas bromi Vauterin et al. 1995

@ref: 7638

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Lysobacteraceae

genus: Xanthomonas

species: Xanthomonas bromi

full scientific name: Xanthomonas bromi Vauterin et al. 1995

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes54.594
6948099.303negative

Culture and growth conditions

culture medium

  • @ref: 7638
  • name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1a
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 7638
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.083

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 98.803

Isolation, sampling and environmental information

isolation

  • @ref: 7638
  • sample type: Bromus carinatus
  • host species: Bromus carinatus
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_92.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
  • Last taxonomy: Xanthomonas
  • 16S sequence: Y10764
  • Sequence Identity:
  • Total samples: 52152
  • soil counts: 10026
  • aquatic counts: 6826
  • animal counts: 28252
  • plant counts: 7048

Safety information

risk assessment

  • @ref: 7638
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Xanthomonas bromi strain LMG947 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF209754510ena56449
20218Xanthomonas bromi clone K0907 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequenceHM181911559ena56449
7638X.bromi 16S rRNA geneY107641502ena56449

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Xanthomonas bromi LMG947GCA_900092025contigncbi56449
66792Xanthomonas bromi CFBP1976GCA_002939755contigncbi56449
66792Xanthomonas bromi strain CFBP197656449.4wgspatric56449
66792Xanthomonas bromi strain LMG94756449.3wgspatric56449
66792Xanthomonas bromi LMG 9472772190764draftimg56449
66792Xanthomonas bromi CFBP19762878134011draftimg56449

External links

@ref: 7638

culture collection no.: DSM 18804, CFBP 1976, ICMP 12545, LMG 947

straininfo link

@refpassport
20218http://www.straininfo.net/strains/691105
20218http://www.straininfo.net/strains/304303
20218http://www.straininfo.net/strains/553193
20218http://www.straininfo.net/strains/22950

literature

  • topic: Genetics
  • Pubmed-ID: 27609927
  • title: Draft Genome Sequence of the Xanthomonas bromi Type Strain LMG 947.
  • authors: Hersemann L, Wibberg D, Blom J, Widmer F, Kolliker R
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.00961-16
  • year: 2016

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7638Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18804)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18804
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)