We are hiring!

Strain identifier

BacDive ID: 17602

Type strain: Yes

Species: Xanthomonas arboricola

Strain Designation: S3

Strain history: <- CFBP<- ? <- D. W. Dye

NCBI tax ID(s): 56448 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7.1 (current version):
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 7.1 (current version)

General

@ref: 7710

BacDive-ID: 17602

DSM-Number: 18808

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, plant pathogen

description: Xanthomonas arboricola S3 is a mesophilic plant pathogen that was isolated from Juglandis regia.

NCBI tax id

  • NCBI tax id: 56448
  • Matching level: species

strain history: <- CFBP<- ? <- D. W. Dye

doi: 10.13145/bacdive17602.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Xanthomonas
  • species: Xanthomonas arboricola
  • full scientific name: Xanthomonas arboricola Vauterin et al. 1995

@ref: 7710

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Lysobacteraceae

genus: Xanthomonas

species: Xanthomonas arboricola

full scientific name: Xanthomonas arboricola Vauterin et al. 1995

strain designation: S3

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes67.514
6948099.38negative

Culture and growth conditions

culture medium

  • @ref: 7710
  • name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830c
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 7710
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.304

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 97.601

Isolation, sampling and environmental information

isolation

  • @ref: 7710
  • sample type: Juglandis regia
  • host species: Juglans regia
  • country: New Zealand
  • origin.country: NZL
  • continent: Australia and Oceania

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Tree

taxonmaps

  • @ref: 69479
  • File name: preview.99_92.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
  • Last taxonomy: Xanthomonas
  • 16S sequence: Y10757
  • Sequence Identity:
  • Total samples: 52152
  • soil counts: 10026
  • aquatic counts: 6826
  • animal counts: 28252
  • plant counts: 7048

Safety information

risk assessment

  • @ref: 7710
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Xanthomonas arboricola pv. juglandis gene for 16S rRNA, partial sequence, strain: NCPPB 411AB5585551450ena195709
20218Xanthomonas arboricola strain ICMP35 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF209752507ena195709
7710X.arboricola 16S rRNA geneY107571502ena195709

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Xanthomonas arboricola pv. juglandis CFBP 2528GCA_001013475scaffoldncbi195709
66792Xanthomonas arboricola pv. juglandis strain CFBP 2528195709.15wgspatric195709
66792Xanthomonas arboricola pv. juglandis CFBP 25282627854245draftimg195709

External links

@ref: 7710

culture collection no.: DSM 18808, ATCC 49083, CFBP 2528, ICMP 35, LMG 747, NCPPB 411

straininfo link

@refpassport
20218http://www.straininfo.net/strains/691107
20218http://www.straininfo.net/strains/113723
20218http://www.straininfo.net/strains/541413
20218http://www.straininfo.net/strains/24663
20218http://www.straininfo.net/strains/24661
20218http://www.straininfo.net/strains/24664

literature

  • topic: Genetics
  • Pubmed-ID: 26734033
  • title: Comparative Genomics of Pathogenic and Nonpathogenic Strains of Xanthomonas arboricola Unveil Molecular and Evolutionary Events Linked to Pathoadaptation.
  • authors: Cesbron S, Briand M, Essakhi S, Gironde S, Boureau T, Manceau C, Fischer-Le Saux M, Jacques MA
  • journal: Front Plant Sci
  • DOI: 10.3389/fpls.2015.01126
  • year: 2015

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7710Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18808)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18808
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)