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Strain identifier

BacDive ID: 17592

Type strain: Yes

Species: Xanthomonas vesicatoria

Strain history: <- CFBP <- D. W. Dye

NCBI tax ID(s): 925775 (strain), 56460 (species)

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General

@ref: 16234

BacDive-ID: 17592

DSM-Number: 22252

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, plant pathogen

description: Xanthomonas vesicatoria DSM 22252 is a mesophilic plant pathogen that was isolated from Lycopersicon esculentum.

NCBI tax id

NCBI tax idMatching level
56460species
925775strain

strain history: <- CFBP <- D. W. Dye

doi: 10.13145/bacdive17592.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Xanthomonas
  • species: Xanthomonas vesicatoria
  • full scientific name: Xanthomonas vesicatoria (ex Doidge 1920) Vauterin et al. 1995

@ref: 16234

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Lysobacteraceae

genus: Xanthomonas

species: Xanthomonas vesicatoria

full scientific name: Xanthomonas vesicatoria (ex Doidge 1920) Vauterin et al. 1995

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes70.303
6948098.795negative

Culture and growth conditions

culture medium

  • @ref: 16234
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 16234
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.59

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 98.428

Isolation, sampling and environmental information

isolation

  • @ref: 16234
  • sample type: Lycopersicon esculentum
  • host species: Lycopersicon esculentum
  • country: New Zealand
  • origin.country: NZL
  • continent: Australia and Oceania

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_92.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
  • Last taxonomy: Xanthomonas
  • 16S sequence: Y10761
  • Sequence Identity:
  • Total samples: 52152
  • soil counts: 10026
  • aquatic counts: 6826
  • animal counts: 28252
  • plant counts: 7048

Safety information

risk assessment

  • @ref: 16234
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Xanthomonas vesicatoria clone K0947 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequenceHM181928558ena56460
16234X.vesicatoria 16S rRNA geneY107611502ena925775

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Xanthomonas vesicatoria ATCC 35937 LMG911GCA_001908725completencbi925775
66792Xanthomonas vesicatoria ATCC 35937 ATCC 35937GCA_000192025contigncbi925775
66792Xanthomonas vesicatoria ATCC 35937925775.3wgspatric925775
66792Xanthomonas vesicatoria ATCC 35937925775.5completepatric925775
66792Xanthomonas vesicatoria ATCC 35937 strain LMG911925775.6plasmidpatric925775
66792Xanthomonas vesicatoria ATCC 35937 strain LMG911925775.7plasmidpatric925775
66792Xanthomonas vesicatoria Maraite, ATCC 35937651324111draftimg925775
66792Xanthomonas vesicatoria LMG 9112721755479completeimg925775

External links

@ref: 16234

culture collection no.: DSM 22252, ATCC 35937, CFBP 2537, ICMP 63, LMG 911, NCPPB 422

straininfo link

@refpassport
20218http://www.straininfo.net/strains/111524
20218http://www.straininfo.net/strains/560190
20218http://www.straininfo.net/strains/26198
20218http://www.straininfo.net/strains/26195
20218http://www.straininfo.net/strains/26199

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16234Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22252)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22252
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)