Strain identifier
BacDive ID: 1759
Type strain: 
Species: Alloscardovia criceti
Strain Designation: OMB104
Strain history: <- Masaaki Okamoto, OMB104
NCBI tax ID(s): 356828 (species)
version 8.1 (current version)
General
@ref: 7179
BacDive-ID: 1759
DSM-Number: 17775
keywords: Bacteria, anaerobe, mesophilic
description: Alloscardovia criceti OMB104 is an anaerobe, mesophilic bacterium that was isolated from dental plaque, golden hamster.
NCBI tax id
- NCBI tax id: 356828
- Matching level: species
strain history
- @ref: 7179
- history: <- Masaaki Okamoto, OMB104
doi: 10.13145/bacdive1759.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Alloscardovia
- species: Alloscardovia criceti
- full scientific name: Alloscardovia criceti (Okamoto et al. 2007) Killer et al. 2013
synonyms
- @ref: 20215
- synonym: Metascardovia criceti
@ref: 7179
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Alloscardovia
species: Alloscardovia criceti
full scientific name: Alloscardovia criceti (Okamoto et al. 2007) Killer et al. 2013 emend. Nouioui et al. 2018
strain designation: OMB104
type strain: no
Culture and growth conditions
culture medium
- @ref: 7179
- name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
- growth: yes
- link: https://mediadive.dsmz.de/medium/58
- composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
culture temp
- @ref: 7179
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 7179
- oxygen tolerance: anaerobe
metabolite utilization
| @ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
|---|---|---|---|---|
| 68371 | Potassium 5-ketogluconate | - | builds acid from | |
| 68371 | gluconate | - | builds acid from | 24265 |
| 68371 | L-arabitol | - | builds acid from | 18403 |
| 68371 | D-arabitol | - | builds acid from | 18333 |
| 68371 | L-fucose | - | builds acid from | 18287 |
| 68371 | D-fucose | - | builds acid from | 28847 |
| 68371 | D-tagatose | - | builds acid from | 16443 |
| 68371 | D-lyxose | - | builds acid from | 62318 |
| 68371 | turanose | + | builds acid from | 32528 |
| 68371 | gentiobiose | + | builds acid from | 28066 |
| 68371 | xylitol | - | builds acid from | 17151 |
| 68371 | glycogen | - | builds acid from | 28087 |
| 68371 | starch | - | builds acid from | 28017 |
| 68371 | raffinose | + | builds acid from | 16634 |
| 68371 | melezitose | + | builds acid from | 6731 |
| 68371 | inulin | - | builds acid from | 15443 |
| 68371 | trehalose | - | builds acid from | 27082 |
| 68371 | sucrose | + | builds acid from | 17992 |
| 68371 | melibiose | + | builds acid from | 28053 |
| 68371 | lactose | - | builds acid from | 17716 |
| 68371 | maltose | + | builds acid from | 17306 |
| 68371 | esculin | + | builds acid from | 4853 |
| 68371 | arbutin | - | builds acid from | 18305 |
| 68371 | N-acetylglucosamine | - | builds acid from | 59640 |
| 68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
| 68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
| 68371 | D-sorbitol | - | builds acid from | 17924 |
| 68371 | D-mannitol | - | builds acid from | 16899 |
| 68371 | myo-inositol | - | builds acid from | 17268 |
| 68371 | galactitol | - | builds acid from | 16813 |
| 68371 | L-rhamnose | - | builds acid from | 62345 |
| 68371 | L-sorbose | - | builds acid from | 17266 |
| 68371 | D-fructose | + | builds acid from | 15824 |
| 68371 | D-galactose | - | builds acid from | 12936 |
| 68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
| 68371 | ribitol | - | builds acid from | 15963 |
| 68371 | L-xylose | - | builds acid from | 65328 |
| 68371 | D-xylose | - | builds acid from | 65327 |
| 68371 | D-ribose | + | builds acid from | 16988 |
| 68371 | L-arabinose | + | builds acid from | 30849 |
| 68371 | D-arabinose | - | builds acid from | 17108 |
| 68371 | erythritol | - | builds acid from | 17113 |
| 68371 | glycerol | - | builds acid from | 17754 |
API 50CHac
| @ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7179 | - | - | - | - | + | + | - | - | - | - | - | +/- | + | +/- | - | - | - | - | - | - | - | - | - | +/- | - | + | +/- | +/- | + | - | + | + | - | - | + | + | - | - | - | + | + | - | - | - | - | - | - | - | +/- | - |
Isolation, sampling and environmental information
isolation
- @ref: 7179
- sample type: dental plaque, golden hamster
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Rodentia (Other) |
| #Host Body-Site | #Oral cavity and airways | #Plaque |
| #Host Body-Site | #Oral cavity and airways | #Tooth |
Safety information
risk assessment
- @ref: 7179
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 7179
culture collection no.: DSM 17775
straininfo link
- @ref: 71406
- straininfo: 397040
literature
- topic: Phylogeny
- Pubmed-ID: 17704637
- title: Metascardovia criceti Gen. Nov., Sp. Nov., from hamster dental plaque.
- authors: Okamoto M, Benno Y, Leung KP, Maeda N
- journal: Microbiol Immunol
- DOI: 10.1111/j.1348-0421.2007.tb03964.x
- year: 2007
- mesh: Animals, Base Sequence, Bifidobacteriales Infections/*microbiology, Bifidobacterium/*classification/genetics/isolation & purification, Chaperonin 60/genetics, Cricetinae, Dental Plaque/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7179 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17775) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17775 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 68371 | Automatically annotated from API 50CH acid | |||
| 71406 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID397040.1 | StrainInfo: A central database for resolving microbial strain identifiers |