Strain identifier
BacDive ID: 17589
Type strain:
Species: Xanthomonas hyacinthi
Strain history: <- NCPPB <- E. van Slogteren
NCBI tax ID(s): 1440765 (strain), 56455 (species)
General
@ref: 7869
BacDive-ID: 17589
DSM-Number: 19077
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, plant pathogen
description: Xanthomonas hyacinthi DSM 19077 is a mesophilic plant pathogen that was isolated from Hyacinthus orientalis.
NCBI tax id
NCBI tax id | Matching level |
---|---|
56455 | species |
1440765 | strain |
strain history
- @ref: 7869
- history: <- NCPPB <- E. van Slogteren
doi: 10.13145/bacdive17589.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Xanthomonas
- species: Xanthomonas hyacinthi
- full scientific name: Xanthomonas hyacinthi (ex Wakker 1883) Vauterin et al. 1995
@ref: 7869
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Lysobacteraceae
genus: Xanthomonas
species: Xanthomonas hyacinthi
full scientific name: Xanthomonas hyacinthi (ex Wakker 1883) Vauterin et al. 1995
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7869
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 7869
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 7869
- sample type: Hyacinthus orientalis
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
taxonmaps
- @ref: 69479
- File name: preview.99_399.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_333;99_399&stattab=map
- Last taxonomy: Xanthomonas
- 16S sequence: Y10754
- Sequence Identity:
- Total samples: 20017
- soil counts: 5101
- aquatic counts: 3769
- animal counts: 5827
- plant counts: 5320
Safety information
risk assessment
- @ref: 7869
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7869
- description: X.hyacinthi 16S rRNA gene
- accession: Y10754
- length: 1500
- database: ena
- NCBI tax ID: 56455
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Xanthomonas hyacinthi DSM 19077 | GCA_001010435 | contig | ncbi | 1440765 |
66792 | Xanthomonas hyacinthi DSM 19077 | 1440765.4 | wgs | patric | 1440765 |
66792 | Xanthomonas hyacinthi DSM 19077 | 2651869672 | draft | img | 1440765 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 85.509 | no |
gram-positive | no | 98.047 | no |
anaerobic | no | 98.892 | no |
halophile | no | 94.416 | no |
spore-forming | no | 94.45 | no |
thermophile | no | 99.659 | yes |
glucose-util | yes | 94.079 | no |
aerobic | yes | 90.629 | no |
flagellated | no | 82.471 | no |
glucose-ferment | no | 84.978 | no |
External links
@ref: 7869
culture collection no.: DSM 19077, ATCC 19314, ICMP 189, LMG 739, NCPPB 599, IPO 392
straininfo link
- @ref: 86584
- straininfo: 5617
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
7869 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19077) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19077 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
86584 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID5617.1 | StrainInfo: A central database for resolving microbial strain identifiers |