Strain identifier
BacDive ID: 17588
Type strain: 
Species: Xanthomonas vasicola
Strain Designation: ICBP XM130
Strain history: <- NCPPB <- D. Yirgou et al. (B3100)
NCBI tax ID(s): 56459 (species)
General
@ref: 17677
BacDive-ID: 17588
DSM-Number: 24447
keywords: genome sequence, Bacteria, mesophilic, plant pathogen
description: Xanthomonas vasicola ICBP XM130 is a mesophilic plant pathogen that was isolated from Ensete ventricosum.
NCBI tax id
- NCBI tax id: 56459
- Matching level: species
strain history
- @ref: 17677
- history: <- NCPPB <- D. Yirgou et al. (B3100)
doi: 10.13145/bacdive17588.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Xanthomonas
- species: Xanthomonas vasicola
- full scientific name: Xanthomonas vasicola Vauterin et al. 1995
@ref: 17677
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Lysobacteraceae
genus: Xanthomonas
species: Xanthomonas vasicola
full scientific name: Xanthomonas vasicola Vauterin et al. 1995
strain designation: ICBP XM130
type strain: no
Morphology
multimedia
- @ref: 17677
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_24447.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 17677
- name: YPGA (DSMZ Medium 1015)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1015
- composition: Name: YPGA (DSMZ Medium 1015) Composition: Agar 15.0 g/l Glucose 7.0 g/l Bacto peptone 7.0 g/l Yeast extract 7.0 g/l Distilled water
culture temp
- @ref: 17677
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 17677
- sample type: Ensete ventricosum
- host species: Ensete ventricosum
- country: Ethiopia
- origin.country: ETH
- continent: Africa
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
Safety information
risk assessment
- @ref: 17677
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Xanthomonas vasicola pv. musacearum NCPPB 2005 | GCA_000277875 | scaffold | ncbi | 1094183 |
| 66792 | Xanthomonas campestris pv. musacearum NCPPB 2005 | 1094183.3 | wgs | patric | 1094183 |
| 66792 | Xanthomonas campestris pv. musacearum NCPPB 2005 | 2548876665 | draft | img | 1094183 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 82.247 | no |
| flagellated | no | 86.081 | no |
| gram-positive | no | 98.114 | no |
| anaerobic | no | 98.965 | no |
| aerobic | yes | 92.786 | no |
| halophile | no | 95.296 | no |
| spore-forming | no | 95.382 | no |
| thermophile | no | 98.87 | yes |
| glucose-util | yes | 93.894 | no |
| glucose-ferment | no | 89.835 | no |
External links
@ref: 17677
culture collection no.: DSM 24447, CFBP 7123, ICMP 2870, NCPPB 2005
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 17677 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24447) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24447 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |