Strain identifier
BacDive ID: 17503
Type strain: 
Species: Pseudoxanthomonas mexicana
Strain Designation: UR374_02
Strain history: <- W. Geißdörfer; UR374-02
NCBI tax ID(s): 128785 (species)
version 8.1 (current version)
General
@ref: 5630
BacDive-ID: 17503
DSM-Number: 15133
keywords: Bacteria, mesophilic
description: Pseudoxanthomonas mexicana UR374_02 is a mesophilic bacterium that was isolated from urine from patient with bladder extrophy.
NCBI tax id
- NCBI tax id: 128785
- Matching level: species
strain history
- @ref: 5630
- history: <- W. Geißdörfer; UR374-02
doi: 10.13145/bacdive17503.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Pseudoxanthomonas
- species: Pseudoxanthomonas mexicana
- full scientific name: Pseudoxanthomonas mexicana Thierry et al. 2004
@ref: 5630
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Lysobacteraceae
genus: Pseudoxanthomonas
species: Pseudoxanthomonas mexicana
full scientific name: Pseudoxanthomonas mexicana Thierry et al. 2004
strain designation: UR374_02
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5630 | LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) | yes | https://mediadive.dsmz.de/medium/381 | Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water |
| 5630 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
culture temp
- @ref: 5630
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 5630
- sample type: urine from patient with bladder extrophy
- geographic location: Erlangen
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | |
| #Host Body-Site | #Urogenital tract | #Bladder |
| #Host Body Product | #Fluids | #Urine |
Safety information
risk assessment
- @ref: 5630
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 5630
culture collection no.: DSM 15133
straininfo link
- @ref: 86500
- straininfo: 215496
literature
- topic: Phylogeny
- Pubmed-ID: 15545466
- title: Pseudoxanthomonas mexicana sp. nov. and Pseudoxanthomonas japonensis sp. nov., isolated from diverse environments, and emended descriptions of the genus Pseudoxanthomonas Finkmann et al. 2000 and of its type species.
- authors: Thierry S, Macarie H, Iizuka T, Geissdorfer W, Assih EA, Spanevello M, Verhe F, Thomas P, Fudou R, Monroy O, Labat M, Ouattara AS
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.02810-0
- year: 2004
- mesh: Aerobiosis, Anti-Bacterial Agents/pharmacology, Bacterial Typing Techniques, Base Composition, Bioreactors/*microbiology, Carbohydrate Metabolism, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis/isolation & purification, Flagella, Genes, rRNA, Gentian Violet, Humans, Molecular Sequence Data, Movement, Nitrites/metabolism, Nucleic Acid Hybridization, Oxygen/metabolism, Phenazines, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology, Stenotrophomonas/genetics, Ubiquinone/analysis/isolation & purification, Urine/*microbiology, Xanthomonadaceae/*classification/cytology/*isolation & purification/physiology, Xanthomonas/genetics
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5630 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15133) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15133 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 86500 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID215496.1 | StrainInfo: A central database for resolving microbial strain identifiers |