Strain identifier

BacDive ID: 174740

Type strain: No

Species: Vibrio sp.

Strain history: <- C. Gao, Guangxi Acad. of Sciences, Nanning, China; BGMRC 2032

NCBI tax ID(s): 678 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.2 (current version):
version 9.2 (current version)

General

@ref: 124493

BacDive-ID: 174740

DSM-Number: 102884

keywords: Bacteria

description: Vibrio sp. DSM 102884 is a bacterium that was isolated from soil from mangrove tree Bruguiera gymnorhiza.

NCBI tax id

  • NCBI tax id: 678
  • Matching level: species

strain history

  • @ref: 124493
  • history: <- C. Gao, Guangxi Acad. of Sciences, Nanning, China; BGMRC 2032

doi: 10.13145/bacdive174740.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio sp.
  • full scientific name: Vibrio Pacini 1854 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Beneckea
    20215Lucibacterium
    20215Allomonas

@ref: 124493

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio sp.

full scientific name: Vibrio sp.

type strain: no

Culture and growth conditions

culture medium

  • @ref: 124493
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf

culture temp

  • @ref: 124493
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
124493+---+-----++--+++-++-

Isolation, sampling and environmental information

isolation

  • @ref: 124493
  • sample type: soil from mangrove tree Bruguiera gymnorhiza
  • geographic location: Guangxi, Qinzhou, maowei sea
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 21.9236
  • longitude: 108.845

External links

@ref: 124493

culture collection no.: DSM 102884, BGMRC 2032

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
68368Automatically annotated from API 20E
124493Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102884Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102884)