Strain identifier
BacDive ID: 1747
Type strain:
Species: Bifidobacterium mongoliense
Strain history: K. Watanabe YIT 10443.
NCBI tax ID(s): 1437603 (strain), 518643 (species)
General
@ref: 15674
BacDive-ID: 1747
DSM-Number: 21395
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped
description: Bifidobacterium mongoliense DSM 21395 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from airag, the Mongolian traditional beverage made of fermented mare's milk.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1437603 | strain |
518643 | species |
strain history
@ref | history |
---|---|
15674 | <- K. Watanabe, Yakult Central Inst. Microbiol. Res., Tokyo, Japan; YIT 10443 |
67770 | K. Watanabe YIT 10443. |
doi: 10.13145/bacdive1747.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium mongoliense
- full scientific name: Bifidobacterium mongoliense Watanabe et al. 2009
@ref: 15674
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium mongoliense
full scientific name: Bifidobacterium mongoliense Watanabe et al. 2009 emend. Nouioui et al. 2018
type strain: yes
Morphology
cell morphology
- @ref: 29102
- gram stain: positive
- cell length: 1.4 µm
- cell width: 0.5 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 29102
- production: no
Culture and growth conditions
culture medium
- @ref: 15674
- name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
- growth: yes
- link: https://mediadive.dsmz.de/medium/58
- composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
15674 | positive | growth | 37 | mesophilic |
29102 | positive | growth | 15-35 | |
29102 | positive | optimum | 27.5 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
29102 | positive | growth | 4.5-8.0 |
29102 | positive | optimum | 6.75 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
15674 | anaerobe |
29102 | facultative anaerobe |
spore formation
- @ref: 29102
- spore formation: no
murein
- @ref: 15674
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29102 | 22599 | arabinose | + | carbon source |
29102 | 17057 | cellobiose | + | carbon source |
29102 | 28260 | galactose | + | carbon source |
29102 | 24265 | gluconate | + | carbon source |
29102 | 28087 | glycogen | + | carbon source |
29102 | 17716 | lactose | + | carbon source |
29102 | 28053 | melibiose | + | carbon source |
29102 | 16634 | raffinose | + | carbon source |
29102 | 33942 | ribose | + | carbon source |
29102 | 17814 | salicin | + | carbon source |
29102 | 17992 | sucrose | + | carbon source |
29102 | 4853 | esculin | + | hydrolysis |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | - | builds acid from |
68371 | 28066 | gentiobiose | + | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | + | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | - | builds acid from |
68371 | 17992 | sucrose | - | builds acid from |
68371 | 28053 | melibiose | + | builds acid from |
68371 | 17716 | lactose | + | builds acid from |
68371 | 17306 | maltose | - | builds acid from |
68371 | 17057 | cellobiose | - | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 4853 | esculin | + | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | - | builds acid from |
68371 | 15824 | D-fructose | - | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | + | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 16988 | D-ribose | + | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | - | builds acid from |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
15674 | - | - | - | - | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | + | - | - | - | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
15674 | airag, the Mongolian traditional beverage made of fermented mare's milk | Umnugobi province | Mongolia | MNG | Asia |
67770 | Airag, a traditional fermented mare's milk product from Mongolia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | #Dairy product |
#Engineered | #Food production | #Fermented |
#Engineered | #Food production | #Beverage |
taxonmaps
- @ref: 69479
- File name: preview.99_3550.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_1848;97_2218;98_2722;99_3550&stattab=map
- Last taxonomy: Bifidobacterium mongoliense subclade
- 16S sequence: LC483561
- Sequence Identity:
- Total samples: 20661
- soil counts: 737
- aquatic counts: 1207
- animal counts: 18560
- plant counts: 157
Safety information
risk assessment
- @ref: 15674
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
15674 | Bifidobacterium mongoliense gene for 16S rRNA, partial sequence, strain: YIT 10443 (= JCM 15461, = DSM 21395) | AB433856 | 1477 | ena | 518643 |
67770 | Bifidobacterium mongoliense gene for 16S ribosomal RNA, partial sequence | LC483561 | 1465 | ena | 518643 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bifidobacterium mongoliense DSM 21395 | 1437603.4 | wgs | patric | 1437603 |
66792 | Bifidobacterium mongoliense DSM 21395 | 1437603.3 | wgs | patric | 1437603 |
66792 | Bifidobacterium mongoliense DSM 21395 | 2695420510 | draft | img | 1437603 |
66792 | Bifidobacterium mongoliense DSM 21395 | 2597489915 | draft | img | 1437603 |
67770 | Bifidobacterium mongoliense DSM 21395 | GCA_000771525 | contig | ncbi | 1437603 |
67770 | Bifidobacterium mongoliense DSM 21395 | GCA_000741285 | contig | ncbi | 1437603 |
GC content
@ref | GC-content | method |
---|---|---|
15674 | 61.1 | high performance liquid chromatography (HPLC) |
29102 | 61.1 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 95.17 | yes |
gram-positive | yes | 90.331 | yes |
anaerobic | yes | 89.987 | no |
halophile | no | 66.58 | no |
spore-forming | no | 97.02 | no |
glucose-util | yes | 85.877 | no |
thermophile | no | 96.941 | yes |
aerobic | no | 95.406 | no |
flagellated | no | 96.905 | no |
glucose-ferment | yes | 86.616 | no |
External links
@ref: 15674
culture collection no.: DSM 21395, JCM 15461, YIT 10443, KCTC 5848
straininfo link
- @ref: 71394
- straininfo: 362775
literature
- topic: Phylogeny
- Pubmed-ID: 19502349
- title: Bifidobacterium mongoliense sp. nov., from airag, a traditional fermented mare's milk product from Mongolia.
- authors: Watanabe K, Makino H, Sasamoto M, Kudo Y, Fujimoto J, Demberel S
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.006247-0
- year: 2009
- mesh: Adenosine Triphosphatases/genetics, Animals, Bacterial Typing Techniques, Base Sequence, Bifidobacterium/*classification/genetics/isolation & purification/physiology, Cultured Milk Products/*microbiology, DNA, Bacterial/analysis, Female, Fermentation, Genotype, Horses, Molecular Sequence Data, Mongolia, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymerase Chain Reaction/methods, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
15674 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21395) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21395 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
29102 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25531 | 28776041 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
68371 | Automatically annotated from API 50CH acid | ||||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
71394 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID362775.1 | StrainInfo: A central database for resolving microbial strain identifiers |