Strain identifier

BacDive ID: 1747

Type strain: Yes

Species: Bifidobacterium mongoliense

Strain history: K. Watanabe YIT 10443.

NCBI tax ID(s): 1437603 (strain), 518643 (species)

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General

@ref: 15674

BacDive-ID: 1747

DSM-Number: 21395

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped

description: Bifidobacterium mongoliense DSM 21395 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from airag, the Mongolian traditional beverage made of fermented mare's milk.

NCBI tax id

NCBI tax idMatching level
1437603strain
518643species

strain history

@refhistory
15674<- K. Watanabe, Yakult Central Inst. Microbiol. Res., Tokyo, Japan; YIT 10443
67770K. Watanabe YIT 10443.

doi: 10.13145/bacdive1747.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium mongoliense
  • full scientific name: Bifidobacterium mongoliense Watanabe et al. 2009

@ref: 15674

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium mongoliense

full scientific name: Bifidobacterium mongoliense Watanabe et al. 2009 emend. Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29102positive1.4 µm0.5 µmrod-shapedno
125438no94.5

pigmentation

  • @ref: 29102
  • production: no

Culture and growth conditions

culture medium

  • @ref: 15674
  • name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/58
  • composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water

culture temp

@refgrowthtypetemperature
15674positivegrowth37
29102positivegrowth15-35
29102positiveoptimum27.5
67770positivegrowth30

culture pH

@refabilitytypepH
29102positivegrowth4.5-8.0
29102positiveoptimum6.75

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
15674anaerobe
29102facultative anaerobe
125439obligate anaerobe92.3

spore formation

@refspore formationconfidence
29102no
125438no90.103
125439no98.1

murein

  • @ref: 15674
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2910222599arabinose+carbon source
2910217057cellobiose+carbon source
2910228260galactose+carbon source
2910224265gluconate+carbon source
2910228087glycogen+carbon source
2910217716lactose+carbon source
2910228053melibiose+carbon source
2910216634raffinose+carbon source
2910233942ribose+carbon source
2910217814salicin+carbon source
2910217992sucrose+carbon source
291024853esculin+hydrolysis
68371320061methyl alpha-D-glucopyranoside-builds acid from
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose+builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose+builds acid from
6837117716lactose+builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin+builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
15674-----+----++-------------+---++----+---+----------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15674airag, the Mongolian traditional beverage made of fermented mare's milkUmnugobi provinceMongoliaMNGAsia
67770Airag, a traditional fermented mare's milk product from Mongolia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Dairy product
#Engineered#Food production#Fermented
#Engineered#Food production#Beverage

taxonmaps

  • @ref: 69479
  • File name: preview.99_3550.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_1848;97_2218;98_2722;99_3550&stattab=map
  • Last taxonomy: Bifidobacterium mongoliense subclade
  • 16S sequence: LC483561
  • Sequence Identity:
  • Total samples: 20661
  • soil counts: 737
  • aquatic counts: 1207
  • animal counts: 18560
  • plant counts: 157

Safety information

risk assessment

  • @ref: 15674
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
15674Bifidobacterium mongoliense gene for 16S rRNA, partial sequence, strain: YIT 10443 (= JCM 15461, = DSM 21395)AB4338561477nuccore518643
67770Bifidobacterium mongoliense gene for 16S ribosomal RNA, partial sequenceLC4835611465nuccore518643

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bifidobacterium mongoliense DSM 213951437603.4wgspatric1437603
66792Bifidobacterium mongoliense DSM 213951437603.3wgspatric1437603
66792Bifidobacterium mongoliense DSM 213952695420510draftimg1437603
66792Bifidobacterium mongoliense DSM 213952597489915draftimg1437603
67770Bifidobacterium mongoliense DSM 21395GCA_000771525contigncbi1437603
67770Bifidobacterium mongoliense DSM 21395GCA_000741285contigncbi1437603

GC content

@refGC-contentmethod
1567461.1high performance liquid chromatography (HPLC)
2910261.1

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes89.075yes
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes56.121no
125438spore-formingspore-formingAbility to form endo- or exosporesno90.103yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no90.887no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno93.986yes
125438motile2+flagellatedAbility to perform flagellated movementno94.5yes
125439BacteriaNetspore_formationAbility to form endo- or exosporesno98.1
125439BacteriaNetmotilityAbility to perform movementyes63
125439BacteriaNetgram_stainReaction to gram-stainingpositive68.9
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate anaerobe92.3

External links

@ref: 15674

culture collection no.: DSM 21395, JCM 15461, YIT 10443, KCTC 5848

straininfo link

  • @ref: 71394
  • straininfo: 362775

literature

  • topic: Phylogeny
  • Pubmed-ID: 19502349
  • title: Bifidobacterium mongoliense sp. nov., from airag, a traditional fermented mare's milk product from Mongolia.
  • authors: Watanabe K, Makino H, Sasamoto M, Kudo Y, Fujimoto J, Demberel S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.006247-0
  • year: 2009
  • mesh: Adenosine Triphosphatases/genetics, Animals, Bacterial Typing Techniques, Base Sequence, Bifidobacterium/*classification/genetics/isolation & purification/physiology, Cultured Milk Products/*microbiology, DNA, Bacterial/analysis, Female, Fermentation, Genotype, Horses, Molecular Sequence Data, Mongolia, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymerase Chain Reaction/methods, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
15674Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21395)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21395
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29102Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2553128776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71394Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID362775.1StrainInfo: A central database for resolving microbial strain identifiers
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1