Strain identifier
BacDive ID: 17468
Type strain: 
Species: Luteimonas aestuarii
Strain Designation: B9
Strain history: <- SW Roh, KRIBB
NCBI tax ID(s): 453837 (species)
version 8.1 (current version)
General
@ref: 8251
BacDive-ID: 17468
DSM-Number: 19680
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Luteimonas aestuarii B9 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from tidal flat sediment.
NCBI tax id
- NCBI tax id: 453837
- Matching level: species
strain history
| @ref | history |
|---|---|
| 8251 | <- S. W. Roh, Korea Res. Inst. Biosci. & Biotechnol. (KRIBB), Taejon, South Korea |
| 67771 | <- SW Roh, KRIBB |
doi: 10.13145/bacdive17468.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Luteimonas
- species: Luteimonas aestuarii
- full scientific name: Luteimonas aestuarii Roh et al. 2009
@ref: 8251
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Lysobacteraceae
genus: Luteimonas
species: Luteimonas aestuarii
full scientific name: Luteimonas aestuarii Roh et al. 2009
strain designation: B9
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: negative
Culture and growth conditions
culture medium
- @ref: 8251
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 8251 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 8251 | tidal flat sediment | Yeosu (34°47'26" N 127°34'01" E) | Republic of Korea | KOR | Asia | 34.7906 | 127.567 |
| 67771 | From flat tidal sediment | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Tidal flat |
| #Environmental | #Terrestrial | #Sediment |
Safety information
risk assessment
- @ref: 8251
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8251
- description: Luteimonas aestuarii strain B9 16S ribosomal RNA gene, partial sequence
- accession: EF660758
- length: 1409
- database: ena
- NCBI tax ID: 453837
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Luteimonas aestuarii B9 | GCA_004357985 | contig | ncbi | 453837 |
| 66792 | Luteimonas aestuarii B9 | 2894402790 | draft | img | 453837 |
GC content
- @ref: 8251
- GC-content: 64.7
External links
@ref: 8251
culture collection no.: DSM 19680, KCTC 22048
straininfo link
- @ref: 86464
- straininfo: 398461
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 18974953 | Luteimonas aestuarii sp. nov., isolated from tidal flat sediment. | Roh SW, Kim KH, Nam YD, Chang HW, Kim MS, Yoon JH, Oh HM, Bae JW | J Microbiol | 10.1007/s12275-008-0189-9 | 2008 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Xanthomonadaceae/classification/genetics/*isolation & purification/metabolism | Metabolism |
| Phylogeny | 23504969 | Luteimonas huabeiensis sp. nov., isolated from stratum water. | Wu G, Liu Y, Li Q, Du H, You J, Li H, Ke C, Zhang X, Yu J, Zhao T | Int J Syst Evol Microbiol | 10.1099/ijs.0.049718-0 | 2013 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Oil and Gas Fields/microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Ubiquinone/analysis, *Water Microbiology, Xanthomonadaceae/*classification/genetics/isolation & purification | Genetics |
| Phylogeny | 30826139 | Proposal of Lysobacter pythonis sp. nov. isolated from royal pythons (Python regius). | Busse HJ, Huptas C, Baumgardt S, Loncaric I, Spergser J, Scherer S, Wenning M, Kampfer P | Syst Appl Microbiol | 10.1016/j.syapm.2019.02.002 | 2019 | Animals, Boidae/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal Spacer/genetics, Fatty Acids/analysis, Genes, Bacterial/genetics, Genome, Bacterial/genetics, Lipids/analysis, Lysobacter/chemistry/*classification/genetics, Nucleic Acid Hybridization, *Phylogeny, Polyamines/analysis, Quinones/analysis, Sequence Analysis, DNA | Genetics |
| Phylogeny | 31833828 | Luteimonas yindakuii sp. nov. isolated from the leaves of Dandelion (Taraxacum officinale) on the Qinghai-Tibetan Plateau. | Zhang S, Wang X, Yang J, Lu S, Lai XH, Jin D, Pu J, Li J, Huang Y, Zhang G, Zhu W, Huang Y, Tian Z, Zhou J, Dong K, Lei W, Ren Z, Wang S, Xu J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003863 | 2020 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Leaves/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Taraxacum/*microbiology, Tibet, Vitamin K 2/analogs & derivatives/chemistry, Xanthomonadaceae/*classification/isolation & purification | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 8251 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19680) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19680 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 86464 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398461.1 | StrainInfo: A central database for resolving microbial strain identifiers |