Strain identifier

BacDive ID: 174636

Type strain: No

Species: Rhodococcus sp.

Strain Designation: GH2-10R

Strain history: <- S. D. Lee, Jeju National Univ., Rep. of Korea; GH2-10R <- S. D. Lee, Jeju National Univ., Rep. of Korea; GH2-10R

NCBI tax ID(s): 194249 (species)

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General

@ref: 124365

BacDive-ID: 174636

DSM-Number: 107560

keywords: Bacteria

description: Rhodococcus sp. GH2-10R is a bacterium that was isolated from a rhizosphere mudflat of a halophyte .

NCBI tax id

  • NCBI tax id: 194249
  • Matching level: species

strain history

  • @ref: 124365
  • history: <- S. D. Lee, Jeju National Univ., Rep. of Korea; GH2-10R <- S. D. Lee, Jeju National Univ., Rep. of Korea; GH2-10R

doi: 10.13145/bacdive174636.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Rhodococcus
  • species: Rhodococcus sp.
  • full scientific name: Rhodococcus Zopf 1891 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Rhodococcoides
    20215Prescottella
    20215Prescottia

@ref: 124365

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus sp.

full scientific name: Rhodococcus sp.

strain designation: GH2-10R

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlink
124365TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf
124365ISP2 MEDIUM (DSMZ Medium 987)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium987.pdf

culture temp

  • @ref: 124365
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837928087glycogen-fermentation
6837917634D-glucose-fermentation
683794853esculin+hydrolysis
6837916199urea+hydrolysis
6837917632nitrate-reduction
6837917992sucrose-fermentation
6837917716lactose-fermentation
6837917306maltose-fermentation
6837916899D-mannitol-fermentation
6837965327D-xylose-fermentation
6837916988D-ribose-fermentation
683795291gelatin-hydrolysis

enzymes

@refvalueactivityec
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379gelatinase-
68379urease+3.5.1.5
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase-3.1.3.1
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYG
124365---+----++----------

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
124365--+/-+/--+----------+---

Isolation, sampling and environmental information

isolation

  • @ref: 124365
  • sample type: a rhizosphere mudflat of a halophyte (Suaedae japonica)
  • geographic location: Gangwha Island, Incheon (37° 35' 33'' N, 126° 27' 29'' E)
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia
  • latitude: 37.5925
  • longitude: 126.458

External links

@ref: 124365

culture collection no.: DSM 107560

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
124365Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107560Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107560)