Strain identifier

BacDive ID: 17460

Type strain: Yes

Species: Frateuria aurantia

Strain Designation: G-6

Strain history: <- IFO

NCBI tax ID(s): 767434 (strain), 81475 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2543

BacDive-ID: 17460

DSM-Number: 6220

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Frateuria aurantia G-6 is a mesophilic, Gram-negative bacterium that was isolated from Lilium auratium.

NCBI tax id

NCBI tax idMatching level
767434strain
81475species

strain history

  • @ref: 2543
  • history: <- IFO

doi: 10.13145/bacdive17460.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Rhodanobacteraceae
  • genus: Frateuria
  • species: Frateuria aurantia
  • full scientific name: Frateuria aurantia (ex Kondô and Ameyama 1958) Swings et al. 1980
  • synonyms

    • @ref: 20215
    • synonym: Acetobacter aurantium

@ref: 2543

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Rhodanobacteraceae

genus: Frateuria

species: Frateuria aurantia

full scientific name: Frateuria aurantia (ex Kondô and Ameyama 1958) Swings et al. 1980

strain designation: G-6

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.999

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_6220_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_6220_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_6220_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_6220_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_6220_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 2543
  • name: YPM MEDIUM (DSMZ Medium 360)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/360
  • composition: Name: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water

culture temp

  • @ref: 2543
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.999

Isolation, sampling and environmental information

isolation

  • @ref: 2543
  • sample type: Lilium auratium
  • host species: Lilium auratium
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_5918.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_114;96_316;97_3477;98_4397;99_5918&stattab=map
  • Last taxonomy: Frateuria aurantia subclade
  • 16S sequence: AB091194
  • Sequence Identity:
  • Total samples: 462
  • soil counts: 196
  • aquatic counts: 48
  • animal counts: 91
  • plant counts: 127

Safety information

risk assessment

  • @ref: 2543
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Frateuria aurantia gene for 16S rRNA, partial sequence, strain:IFO3245AB0911941535ena767434
20218Frateuria aurantia 16S rRNA geneAJ0104811501ena767434

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Frateuria aurantia DSM 6220GCA_000242255completencbi767434
66792Frateuria aurantia DSM 6220767434.3completepatric767434
66792Frateuria aurantia Kondo 67, DSM 62202509601034completeimg767434

GC content

  • @ref: 2543
  • GC-content: 62.0-64.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes85.244no
flagellatedno73.349no
gram-positiveno97.759no
anaerobicno99.181no
aerobicyes92.058no
halophileno89.92no
spore-formingno94.379no
thermophileno98.581yes
glucose-utilyes94.454no
glucose-fermentno86.757no

External links

@ref: 2543

culture collection no.: DSM 6220, ATCC 33424, DSM 4495, IFO 3245, CCUG 18137, LMG 1558

straininfo link

  • @ref: 86456
  • straininfo: 2845

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11155971Identification of acetic acid bacteria by RFLP of PCR-amplified 16S rDNA and 16S-23S rDNA intergenic spacer.Ruiz A, Poblet M, Mas A, Guillamon JMInt J Syst Evol Microbiol10.1099/00207713-50-6-19812000Acetobacteraceae/*classification/genetics, DNA, Ribosomal/*analysis/genetics, DNA, Ribosomal Spacer/genetics, *Polymerase Chain Reaction, *Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Reference Standards, *Ribotyping
Phylogeny12148641Fulvimonas soli gen. nov., sp. nov., a gamma-proteobacterium isolated from soil after enrichment on acetylated starch plastic.Mergaert J, Cnockaert MC, Swings JInt J Syst Evol Microbiol10.1099/00207713-52-4-12852002Acetylation, Bacterial Typing Techniques, Biodegradation, Environmental, Culture Media, DNA, Ribosomal/analysis, Fatty Acids/analysis, Gammaproteobacteria/chemistry/*classification/growth & development/*isolation & purification, Molecular Sequence Data, Phenotype, Phylogeny, Plastics/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Starch/*metabolismCultivation
Phylogeny16014492Dyella koreensis sp. nov., a beta-glucosidase-producing bacterium.An DS, Im WT, Yang HC, Yang DC, Lee STInt J Syst Evol Microbiol10.1099/ijs.0.63695-02005Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plant Roots/*microbiology, Plants/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Xanthomonadaceae/*classification/*enzymology/genetics/physiology, beta-Glucosidase/*biosynthesisGenetics
Phylogeny16280484Luteibacter rhizovicinus gen. nov., sp. nov., a yellow-pigmented gammaproteobacterium isolated from the rhizosphere of barley (Hordeum vulgare L.).Johansen JE, Binnerup SJ, Kroer N, Molbak LInt J Syst Evol Microbiol10.1099/ijs.0.63497-02005DNA, Bacterial/analysis, Gammaproteobacteria/chemistry/*classification/growth & development/isolation & purification, Hordeum/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, Random Amplified Polymorphic DNA Technique, Sequence Analysis, DNA, *Soil Microbiology, SymbiosisGenetics
Phylogeny16902003Rhodanobacter spathiphylli sp. nov., a gammaproteobacterium isolated from the roots of Spathiphyllum plants grown in a compost-amended potting mix.De Clercq D, Van Trappen S, Cleenwerck I, Ceustermans A, Swings J, Coosemans J, Ryckeboer JInt J Syst Evol Microbiol10.1099/ijs.0.64131-02006Antibiosis, Araceae/growth & development/*microbiology, Base Composition, Catalase/analysis, Culture Media, DNA, Bacterial, Fatty Acids/analysis, Gammaproteobacteria/chemistry/*classification/isolation & purification/physiology, Hypocreales/physiology, Molecular Sequence Data, Oxidoreductases/analysis, Phylogeny, Plant Diseases/microbiology, Plant Roots/microbiology, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Soil, Soil Microbiology, Species SpecificityCultivation
Phylogeny16957102Dyella yeojuensis sp. nov., isolated from greenhouse soil in Korea.Kim BY, Weon HY, Lee KH, Seok SJ, Kwon SW, Go SJ, Stackebrandt EInt J Syst Evol Microbiol10.1099/ijs.0.64175-02006Bacterial Typing Techniques, DNA, Bacterial/analysis, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, *Soil Microbiology, Xanthomonadaceae/classification/genetics/*isolation & purificationGenetics
Phylogeny19244422Dyella ginsengisoli sp. nov., isolated from soil of a ginseng field in South Korea.Jung HM, Ten LN, Kim KH, An DS, Im WT, Lee STInt J Syst Evol Microbiol10.1099/ijs.0.64514-02009Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, *Panax/growth & development, Phenotype, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Xanthomonadaceae/*classification/genetics/isolation & purification/physiologyGenetics
Phylogeny20305058Dyella thiooxydans sp. nov., a facultatively chemolithotrophic, thiosulfate-oxidizing bacterium isolated from rhizosphere soil of sunflower (Helianthus annuus L.).Anandham R, Kwon SW, Indira Gandhi P, Kim SJ, Weon HY, Kim YS, Sa TM, Kim YK, Jee HJInt J Syst Evol Microbiol10.1099/ijs.0.022012-02010Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids, Helianthus/*microbiology, Molecular Sequence Data, Phenotype, Phospholipids, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Xanthomonadaceae/*classification/genetics/isolation & purificationGenetics
Phylogeny20348318Frateuria terrea sp. nov., isolated from forest soil, and emended description of the genus Frateuria.Zhang JY, Liu XY, Liu SJInt J Syst Evol Microbiol10.1099/ijs.0.021618-02010Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Flagella/microbiology, Genotype, Molecular Sequence Data, Phenotype, Phosphatidylethanolamines/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Trees/*microbiology, Xanthomonadaceae/*classification/genetics/isolation & purificationGenetics
Enzymology23760531A unique enzyme of acetic acid bacteria, PQQ-dependent alcohol dehydrogenase, is also present in Frateuria aurantia.Trcek J, Matsushita KAppl Microbiol Biotechnol10.1007/s00253-013-5007-62013Alcohol Oxidoreductases/chemistry/genetics/isolation & purification/*metabolism, Amino Acid Sequence, Chromatography, Affinity, Chromatography, Ion Exchange, Cluster Analysis, DNA, Bacterial/chemistry/genetics, Gluconacetobacter/enzymology/genetics, Molecular Sequence Data, Molecular Weight, Phylogeny, Protein Multimerization, Protein Subunits, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Substrate Specificity, Xanthomonadaceae/*enzymology/geneticsPhylogeny
Phylogeny30785390Frateuria defendens sp. nov., bacterium isolated from the yellows grapevine's disease vector Hyalesthes obsoletus.Lidor O, Santos-Garcia D, Mozes-Daube N, Naor V, Cohen E, Iasur-Kruh L, Bahar O, Zchori-Fein EInt J Syst Evol Microbiol10.1099/ijsem.0.0033052019Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Disease Vectors, Fatty Acids/chemistry, Hemiptera/*microbiology, Israel, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, Pseudomonadaceae/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome
Phylogeny34919040Frateuria flava sp. nov., isolated from soil.Akter S, Lee SY, Huq MAInt J Syst Evol Microbiol10.1099/ijsem.0.0051712021Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2543Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6220)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6220
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86456Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID2845.1StrainInfo: A central database for resolving microbial strain identifiers