Strain identifier

BacDive ID: 17440

Type strain: Yes

Species: Azorhizobium caulinodans

Strain Designation: ORS 571

Culture col. no.: DSM 5975, ATCC 43989, CCUG 26647, LMG 6465

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2402

BacDive-ID: 17440

DSM-Number: 5975

keywords: Bacteria, 16S sequence, mesophilic

description: Azorhizobium caulinodans DSM 5975 is a mesophilic bacterium that was isolated from Sesbania rastrata stem nodules isolate.

strain history: <- ATCC <- LMB 6465 <- B. Dreyfus, ORS 571

doi: 10.13145/bacdive17440.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Xanthobacteraceae
  • genus: Azorhizobium
  • species: Azorhizobium caulinodans
  • full scientific name: Azorhizobium caulinodans Dreyfus et al. 1988

@ref: 2402

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Xanthobacteraceae

genus: Azorhizobium

species: Azorhizobium caulinodans

full scientific name: Azorhizobium caulinodans Dreyfus et al. 1988

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2402Nutrient agar (NA)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1.pdf
33109MEDIUM 328- for nutrient agaryesDistilled water make up to (1000.000 ml);Agar (15.000 g);Peptone (5.000g);Beef extract (3.000 g)

culture temp

@refgrowthtypetemperaturerange
2402positivegrowth30mesophilic
33109positivegrowth30mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4342785146carboxymethylcellulose+degradation
4342785249hydroxyethylcellulose+hydrolysis
4342737166xylan-degradation

Isolation, sampling and environmental information

isolation

  • @ref: 2402
  • sample type: Sesbania rastrata stem nodules isolate
  • host species: Sesbania rastrata

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Stem (Branch)

Safety information

risk assessment

  • @ref: 2402
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Azorhizobium caulinodans strain LMG 6465 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequenceAF345253852ena438753
20218Azorhizobium caulinodans partial 16S rRNA gene, strain LMG 6465X672211434ena438753
20218Azorhizobium caulinodans gene for 16S rRNA, partial sequence, strain: NBRC 14845AB6806771408ena7
20218Azorhizobium caulinodans gene for 16S rRNA, complete sequence, type strain: ORS 571D113421467ena438753
20218Azorhizobium caulinodans 16S rRNA geneD139481436ena438753
20218Azorhizobium caulinodans (ORS 571) 16S ribosomal RNA (partial)M55491261ena438753
20218A.caulinodans 16S ribosomal RNAX942001410ena438753
20218Azorhizobium caulinodans strain USDA4892 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceHQ143398938ena7

External links

@ref: 2402

culture collection no.: DSM 5975, ATCC 43989, ORS 571

straininfo link

@refpassport
20218http://www.straininfo.net/strains/159571
20218http://www.straininfo.net/strains/4175

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2402Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5975)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5975
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33109Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4754
43427Danny Geelen, Marc van Montagu and Marcelle Holstershttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC167611/ Cloning of an Azorhizobium caulinodans Endoglucanase Gene and Analysis of Its Role in SymbiosisAppl. Environ. Microbiol. 61 (9): 3304-3310 1995