Strain identifier
BacDive ID: 17429
Type strain: 
Species: Xanthobacter flavus
Strain Designation: 14p1
Strain history: <- C. Sommer; 14p1
NCBI tax ID(s): 281 (species)
version 8.1 (current version)
General
@ref: 3907
BacDive-ID: 17429
DSM-Number: 10330
keywords: 16S sequence, Bacteria, mesophilic
description: Xanthobacter flavus 14p1 is a mesophilic bacterium that was isolated from contaminated sediments.
NCBI tax id
- NCBI tax id: 281
- Matching level: species
strain history
- @ref: 3907
- history: <- C. Sommer; 14p1
doi: 10.13145/bacdive17429.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Xanthobacteraceae
- genus: Xanthobacter
- species: Xanthobacter flavus
- full scientific name: Xanthobacter flavus Malik and Claus 1979 (Approved Lists 1980)
@ref: 3907
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Xanthobacteraceae
genus: Xanthobacter
species: Xanthobacter flavus
full scientific name: Xanthobacter flavus Malik and Claus 1979 emend. Reding et al. 1992
strain designation: 14p1
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 3907 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 3907 | MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) | yes | https://mediadive.dsmz.de/medium/457 | Name: MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) Composition: Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water |
culture temp
- @ref: 3907
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 3907
- sample type: contaminated sediments
- geographic location: Bitterfeld
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Environmental | #Terrestrial | #Sediment |
Safety information
risk assessment
- @ref: 3907
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Xanthobacter flavus strain DSM 10330 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence
- accession: DQ834674
- length: 952
- database: ena
- NCBI tax ID: 281
External links
@ref: 3907
culture collection no.: DSM 10330
straininfo link
- @ref: 86425
- straininfo: 48813
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3907 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10330) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10330 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 86425 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48813.1 | StrainInfo: A central database for resolving microbial strain identifiers |