Strain identifier

BacDive ID: 17427

Type strain: No

Species: Xanthobacter autotrophicus

Strain Designation: GJ10

Strain history: <- D.B. Janssen, GJ10

NCBI tax ID(s): 280 (species)

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General

@ref: 1494

BacDive-ID: 17427

DSM-Number: 3874

keywords: genome sequence, Bacteria, mesophilic

description: Xanthobacter autotrophicus GJ10 is a mesophilic bacterium that was isolated from soil and activated sludge.

NCBI tax id

  • NCBI tax id: 280
  • Matching level: species

strain history

  • @ref: 1494
  • history: <- D.B. Janssen, GJ10

doi: 10.13145/bacdive17427.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Xanthobacteraceae
  • genus: Xanthobacter
  • species: Xanthobacter autotrophicus
  • full scientific name: Xanthobacter autotrophicus (Baumgarten et al. 1974) Wiegel et al. 1978 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Corynebacterium autotrophicum

@ref: 1494

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Xanthobacteraceae

genus: Xanthobacter

species: Xanthobacter autotrophicus

full scientific name: Xanthobacter autotrophicus (Baumgarten et al. 1974) Wiegel et al. 1978

strain designation: GJ10

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1494HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428)yeshttps://mediadive.dsmz.de/medium/428Name: HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) Composition: Agar 19.802 g/l Na2HPO4 x 2 H2O 2.87129 g/l KH2PO4 2.27723 g/l D-Glucose 1.9802 g/l Na-lactate 0.990099 g/l Na-pyruvate 0.990099 g/l D-Mannitol 0.990099 g/l DL-Malate 0.990098 g/l Na-acetate 0.990098 g/l Yeast extract 0.990098 g/l NH4Cl 0.990098 g/l Disodium succinate 0.990098 g/l MgSO4 x 7 H2O 0.495049 g/l Ferric ammonium citrate 0.049505 g/l CaCl2 x 2 H2O 0.00990098 g/l NaVO3 x H2O 0.00495049 g/l Thiamine-HCl x 2 H2O 0.00247525 g/l Nicotinic acid 0.00247525 g/l Pyridoxine hydrochloride 0.00247525 g/l Calcium pantothenate 0.00247525 g/l H3BO3 0.00148515 g/l CoCl2 x 6 H2O 0.000990099 g/l Riboflavin 0.00049505 g/l ZnSO4 x 7 H2O 0.00049505 g/l MnCl2 x 4 H2O 0.000148515 g/l Na2MoO4 x 2 H2O 0.000148515 g/l NiCl2 x 6 H2O 9.90099e-05 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Vitamin B12 4.95049e-05 g/l Folic acid 9.90099e-06 g/l Biotin 4.9505e-06 g/l Distilled water
1494MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81)yeshttps://mediadive.dsmz.de/medium/81Name: MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81) Composition: Agar 20.1005 g/l Na2HPO4 x 2 H2O 2.91457 g/l KH2PO4 2.31156 g/l NH4Cl 1.00503 g/l MgSO4 x 7 H2O 0.502512 g/l Ferric ammonium citrate 0.0502513 g/l CaCl2 x 2 H2O 0.0100503 g/l NaVO3 x H2O 0.00502512 g/l Calcium pantothenate 0.00251256 g/l Pyridoxine hydrochloride 0.00251256 g/l Nicotinic acid 0.00251256 g/l Thiamine-HCl x 2 H2O 0.00251256 g/l H3BO3 0.00150754 g/l CoCl2 x 6 H2O 0.00100503 g/l Riboflavin 0.000502513 g/l ZnSO4 x 7 H2O 0.000502513 g/l MnCl2 x 4 H2O 0.000150754 g/l Na2MoO4 x 2 H2O 0.000150754 g/l NiCl2 x 6 H2O 0.000100503 g/l CuCl2 x 2 H2O 5.02513e-05 g/l Vitamin B12 5.02513e-05 g/l Folic acid 1.00503e-05 g/l Biotin 5.02513e-06 g/l Distilled water
1494NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 1494
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

compound production

  • @ref: 1494
  • compound: dehalogenases

Isolation, sampling and environmental information

isolation

  • @ref: 1494
  • sample type: soil and activated sludge
  • geographic location: Groningen
  • country: Netherlands
  • origin.country: NLD
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Activated sludge
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 1494
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Xanthobacter autotrophicus GJ10
  • accession: GCA_020683165
  • assembly level: chromosome
  • database: ncbi
  • NCBI tax ID: 280

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno93.877no
gram-positiveno98.418no
anaerobicno95.944no
aerobicyes92.09no
halophileno84.23no
spore-formingno94.508no
motileno76.821no
thermophileno98.172yes
glucose-utilyes82.272no
glucose-fermentno91.781no

External links

@ref: 1494

culture collection no.: DSM 3874

straininfo link

  • @ref: 86423
  • straininfo: 45102

Reference

@idauthorscataloguedoi/urltitle
1494Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3874)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3874
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
86423Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45102.1StrainInfo: A central database for resolving microbial strain identifiers