Strain identifier

BacDive ID: 17421

Type strain: No

Species: Xanthobacter autotrophicus

Strain Designation: TK 0519

Strain history: CIP <- 1998, JCM <- T. Urakami: strain TK 0519 <- DSM <- M. Reh: strain RH10, Corynebacterium autotrophicum

NCBI tax ID(s): 3119913 (strain), 280 (species)

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General

@ref: 310

BacDive-ID: 17421

DSM-Number: 597

keywords: Bacteria, mesophilic, Gram-negative, rod-shaped

description: Xanthobacter autotrophicus TK 0519 is a mesophilic, Gram-negative, rod-shaped bacterium of the family Xanthobacteraceae.

NCBI tax id

NCBI tax idMatching level
3119913strain
280species

strain history

@refhistory
310<- M. Reh, RH 10
67770T. Urakami TK 0519 <-- DSM 597 <-- M. Reh RH10.
116657CIP <- 1998, JCM <- T. Urakami: strain TK 0519 <- DSM <- M. Reh: strain RH10, Corynebacterium autotrophicum

doi: 10.13145/bacdive17421.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Xanthobacteraceae
  • genus: Xanthobacter
  • species: Xanthobacter autotrophicus
  • full scientific name: Xanthobacter autotrophicus (Baumgarten et al. 1974) Wiegel et al. 1978 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Corynebacterium autotrophicum

@ref: 310

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Xanthobacteraceae

genus: Xanthobacter

species: Xanthobacter autotrophicus

full scientific name: Xanthobacter autotrophicus (Baumgarten et al. 1974) Wiegel et al. 1978

strain designation: TK 0519

type strain: no

Morphology

cell morphology

  • @ref: 116657
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 116657

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
310HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428)yeshttps://mediadive.dsmz.de/medium/428Name: HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) Composition: Agar 19.802 g/l Na2HPO4 x 2 H2O 2.87129 g/l KH2PO4 2.27723 g/l D-Glucose 1.9802 g/l Na-lactate 0.990099 g/l Na-pyruvate 0.990099 g/l D-Mannitol 0.990099 g/l DL-Malate 0.990098 g/l Na-acetate 0.990098 g/l Yeast extract 0.990098 g/l NH4Cl 0.990098 g/l Disodium succinate 0.990098 g/l MgSO4 x 7 H2O 0.495049 g/l Ferric ammonium citrate 0.049505 g/l CaCl2 x 2 H2O 0.00990098 g/l NaVO3 x H2O 0.00495049 g/l Thiamine-HCl x 2 H2O 0.00247525 g/l Nicotinic acid 0.00247525 g/l Pyridoxine hydrochloride 0.00247525 g/l Calcium pantothenate 0.00247525 g/l H3BO3 0.00148515 g/l CoCl2 x 6 H2O 0.000990099 g/l Riboflavin 0.00049505 g/l ZnSO4 x 7 H2O 0.00049505 g/l MnCl2 x 4 H2O 0.000148515 g/l Na2MoO4 x 2 H2O 0.000148515 g/l NiCl2 x 6 H2O 9.90099e-05 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Vitamin B12 4.95049e-05 g/l Folic acid 9.90099e-06 g/l Biotin 4.9505e-06 g/l Distilled water
310MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81)yeshttps://mediadive.dsmz.de/medium/81Name: MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81) Composition: Agar 20.1005 g/l Na2HPO4 x 2 H2O 2.91457 g/l KH2PO4 2.31156 g/l NH4Cl 1.00503 g/l MgSO4 x 7 H2O 0.502512 g/l Ferric ammonium citrate 0.0502513 g/l CaCl2 x 2 H2O 0.0100503 g/l NaVO3 x H2O 0.00502512 g/l Calcium pantothenate 0.00251256 g/l Pyridoxine hydrochloride 0.00251256 g/l Nicotinic acid 0.00251256 g/l Thiamine-HCl x 2 H2O 0.00251256 g/l H3BO3 0.00150754 g/l CoCl2 x 6 H2O 0.00100503 g/l Riboflavin 0.000502513 g/l ZnSO4 x 7 H2O 0.000502513 g/l MnCl2 x 4 H2O 0.000150754 g/l Na2MoO4 x 2 H2O 0.000150754 g/l NiCl2 x 6 H2O 0.000100503 g/l CuCl2 x 2 H2O 5.02513e-05 g/l Vitamin B12 5.02513e-05 g/l Folic acid 1.00503e-05 g/l Biotin 5.02513e-06 g/l Distilled water
310NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
32708MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
116657CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
310positivegrowth30
32708positivegrowth30
67770positivegrowth30
116657positivegrowth25-30
116657nogrowth5
116657nogrowth10
116657nogrowth37
116657nogrowth41
116657nogrowth45

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
116657NaClpositivegrowth0-2 %
116657NaClnogrowth4 %
116657NaClnogrowth6 %
116657NaClnogrowth8 %
116657NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1166574853esculin-hydrolysis
116657606565hippurate+hydrolysis
11665717632nitrate+reduction
11665716301nitrite-reduction
11665717632nitrate-respiration

antibiotic resistance

  • @ref: 116657
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 116657
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382esterase lipase (C 8)+
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
116657oxidase+
116657beta-galactosidase-3.2.1.23
116657alcohol dehydrogenase-1.1.1.1
116657gelatinase-
116657amylase-
116657DNase-
116657caseinase-3.4.21.50
116657catalase+1.11.1.6
116657tween esterase-
116657gamma-glutamyltransferase-2.3.2.2
116657lecithinase-
116657lipase-
116657lysine decarboxylase-4.1.1.18
116657ornithine decarboxylase-4.1.1.17
116657phenylalanine ammonia-lyase-4.3.1.24
116657protease-
116657tryptophan deaminase-
116657urease+3.5.1.5
68382beta-glucosidase-3.2.1.21
68382acid phosphatase+3.1.3.2
68382cystine arylamidase-3.4.11.3
68382lipase (C 14)-

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116657--++----+-+---------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116657-------------------------------------------------++-+++++---+--------------+--+++++-----+----+-++-+

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
3101Risk group (German classification)
1166571Risk group (French classification)

External links

@ref: 310

culture collection no.: DSM 597, RH 10, JCM 7864, CIP 105437

straininfo link

  • @ref: 86417
  • straininfo: 47234

Reference

@idauthorscataloguedoi/urltitle
310Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 597)https://www.dsmz.de/collection/catalogue/details/culture/DSM-597
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32708Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17457
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
86417Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47234.1StrainInfo: A central database for resolving microbial strain identifiers
116657Curators of the CIPCollection of Institut Pasteur (CIP 105437)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105437