Strain identifier

BacDive ID: 17358

Type strain: Yes

Species: Vibrio marisflavi

Strain Designation: WH134

Strain history: <- X.-H. Zhang, Ocean Univ. China, Qingdao, P. R. China; CGMCC 1.8994 <- H. Wang

NCBI tax ID(s): 1216040 (species)

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General

@ref: 16571

BacDive-ID: 17358

DSM-Number: 23086

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Vibrio marisflavi WH134 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from seawater at a depth of 10 m near the Yellow Sea Cold Water Mass.

NCBI tax id

  • NCBI tax id: 1216040
  • Matching level: species

strain history

  • @ref: 16571
  • history: <- X.-H. Zhang, Ocean Univ. China, Qingdao, P. R. China; CGMCC 1.8994 <- H. Wang

doi: 10.13145/bacdive17358.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio marisflavi
  • full scientific name: Vibrio marisflavi Wang et al. 2011

@ref: 16571

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio marisflavi

full scientific name: Vibrio marisflavi Wang et al. 2011

strain designation: WH134

type strain: yes

Morphology

cell morphology

  • @ref: 29842
  • gram stain: negative
  • cell length: 0.9 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 29842
  • production: yes

multimedia

  • @ref: 16571
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_23086.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 16571
  • name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514c
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperature
16571positivegrowth28
29842positivegrowth16-37

culture pH

  • @ref: 29842
  • ability: positive
  • type: growth
  • pH: 05-10
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 29842
  • oxygen tolerance: facultative anaerobe

halophily

  • @ref: 29842
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 01-06 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2984230089acetate+carbon source
2984216449alanine+carbon source
2984222653asparagine+carbon source
2984235391aspartate+carbon source
2984217057cellobiose+carbon source
2984216947citrate+carbon source
2984228757fructose+carbon source
2984228260galactose+carbon source
2984224265gluconate+carbon source
2984217234glucose+carbon source
2984229987glutamate+carbon source
2984217754glycerol+carbon source
2984227570histidine+carbon source
2984217306maltose+carbon source
2984237684mannose+carbon source
2984228053melibiose+carbon source
2984251850methyl pyruvate+carbon source
2984217268myo-inositol+carbon source
29842506227N-acetylglucosamine+carbon source
2984216634raffinose+carbon source
2984217822serine+carbon source
2984230031succinate+carbon source
2984217992sucrose+carbon source
2984226986threonine+carbon source
2984227082trehalose+carbon source
2984253423tween 40+carbon source
2984253426tween 80+carbon source
2984227248urocanic acid+carbon source
298424853esculin+hydrolysis
2984217632nitrate+reduction

enzymes

@refvalueactivityec
29842catalase+1.11.1.6
29842gelatinase+
29842cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 16571
  • sample type: seawater at a depth of 10 m near the Yellow Sea Cold Water Mass
  • geographic location: Yellow Sea, 31° 59.970' N 123° 0.157' E
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 31.9994
  • longitude: 123.003

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

  • @ref: 16571
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16571
  • description: Vibrio marisflavi CECT 7928 strain WH134 16S ribosomal RNA gene, partial sequence
  • accession: FJ847833
  • length: 1290
  • database: nuccore
  • NCBI tax ID: 634439

GC content

@refGC-contentmethod
1657142.5high performance liquid chromatography (HPLC)
2984242.5

External links

@ref: 16571

culture collection no.: DSM 23086, CGMCC 1.8994, LMG 25284

straininfo link

  • @ref: 86359
  • straininfo: 362520

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20382785Vibrio marisflavi sp. nov., isolated from seawater.Wang H, Liu J, Wang Y, Zhang XHInt J Syst Evol Microbiol10.1099/ijs.0.022285-02010Bacterial Proteins/genetics, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydroxybutyrates/analysis, Molecular Sequence Data, Phylogeny, Polyesters/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vibrio/*classification/genetics/*isolation & purification/physiologyGenetics
Phylogeny34874245Vibrio ulleungensis sp. nov., isolated from Mytilus coruscus.Moon YL, Park JSInt J Syst Evol Microbiol10.1099/ijsem.0.0051362021Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Mytilus/microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/chemistry, *Vibrio/classification/isolation & purificationTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16571Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23086)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23086
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29842Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2621828776041
86359Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID362520.1StrainInfo: A central database for resolving microbial strain identifiers