Strain identifier
BacDive ID: 17350
Type strain: 
Species: Vibrio owensii
Strain Designation: DY05
Strain history: L. Høj DY05.
NCBI tax ID(s): 1229493 (strain), 696485 (species)
version 8.1 (current version)
General
@ref: 16678
BacDive-ID: 17350
DSM-Number: 23055
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile, animal pathogen
description: Vibrio owensii DY05 is a mesophilic, motile animal pathogen that was isolated from spiny lobster Panulirus ornatus larva.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1229493 | strain |
| 696485 | species |
strain history
| @ref | history |
|---|---|
| 16678 | <- L. Hoj, Australian Inst. Marine Sci., Townsville; DY05 <- E. Goulden |
| 67770 | L. Høj DY05. |
doi: 10.13145/bacdive17350.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio owensii
- full scientific name: Vibrio owensii Cano-Gómez et al. 2010
synonyms
- @ref: 20215
- synonym: Vibrio communis
@ref: 16678
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales, not validated
family: Vibrionaceae
genus: Vibrio
species: Vibrio owensii
full scientific name: Vibrio owensii Cano-Gómez et al. 2010
strain designation: DY05
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 95.363 | |
| 69480 | 99.991 | negative |
Culture and growth conditions
culture medium
- @ref: 16678
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16678 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.817 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 16678 | spiny lobster Panulirus ornatus larva | Panulirus ornatus | North Queensland | Australia | AUS | Australia and Oceania |
| 67770 | Cultured larvae of the ornate spiny lobster P. ornatus in Queensland | Australia | AUS | Australia and Oceania |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Host | #Arthropoda | #Crustacea |
taxonmaps
- @ref: 69479
- File name: preview.99_1344.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_74;98_81;99_1344&stattab=map
- Last taxonomy: Vibrio
- 16S sequence: GU018180
- Sequence Identity:
- Total samples: 345
- soil counts: 4
- aquatic counts: 169
- animal counts: 159
- plant counts: 13
Safety information
risk assessment
- @ref: 16678
- pathogenicity animal: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16678
- description: VIbrio owensii CAIM 1854 = LMG 25443 strain DY05 16S ribosomal RNA gene, partial sequence
- accession: GU018180
- length: 1421
- database: ena
- NCBI tax ID: 1229493
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | VIbrio owensii CAIM 1854 = LMG 25443 | 1229493.3 | wgs | patric | 1229493 |
| 66792 | Vibrio owensii CAIM 1854 = LMG 25443 strain DY05 | 1229493.5 | wgs | patric | 1229493 |
| 67770 | Vibrio owensii CAIM 1854 = LMG 25443 | GCA_000400385 | contig | ncbi | 1229493 |
| 67770 | Vibrio owensii CAIM 1854 = LMG 25443 DY05 | GCA_000817815 | scaffold | ncbi | 1229493 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 16678 | 45.3 | |
| 67770 | 45.3 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 91.489 | no |
| gram-positive | no | 98.299 | no |
| anaerobic | no | 97.092 | no |
| aerobic | yes | 80.524 | no |
| halophile | no | 56.972 | no |
| spore-forming | no | 91.636 | no |
| thermophile | no | 99.724 | yes |
| glucose-util | yes | 87.541 | no |
| flagellated | yes | 90.866 | no |
| glucose-ferment | yes | 87.319 | no |
External links
@ref: 16678
culture collection no.: DSM 23055, ACM 5300, JCM 16517, LMG 25443
straininfo link
- @ref: 86351
- straininfo: 364094
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20002183 | Vibrio owensii sp. nov., isolated from cultured crustaceans in Australia. | Cano-Gomez A, Goulden EF, Owens L, Hoj L | FEMS Microbiol Lett | 10.1111/j.1574-6968.2009.01850.x | 2009 | Animals, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Palinuridae/*microbiology, Penaeidae/*microbiology, Phylogeny, Queensland, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vibrio/chemistry/*classification/genetics/*isolation & purification | Genetics |
| Genetics | 23710045 | Taxonomic revision of Harveyi clade bacteria (family Vibrionaceae) based on analysis of whole genome sequences. | Urbanczyk H, Ogura Y, Hayashi T | Int J Syst Evol Microbiol | 10.1099/ijs.0.051110-0 | 2013 | Bacterial Typing Techniques, DNA, Bacterial/genetics, *Genome, Bacterial, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vibrio/*classification/genetics | Phylogeny |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16678 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23055) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23055 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 86351 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID364094.1 | StrainInfo: A central database for resolving microbial strain identifiers |