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Strain identifier

BacDive ID: 17350

Type strain: Yes

Species: Vibrio owensii

Strain Designation: DY05

Strain history: L. Høj DY05.

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16678

BacDive-ID: 17350

DSM-Number: 23055

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen

description: Vibrio owensii DY05 is a mesophilic animal pathogen that was isolated from spiny lobster Panulirus ornatus larva.

NCBI tax id

NCBI tax idMatching level
696485species
1229493strain

strain history

doi: 10.13145/bacdive17350.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio owensii
  • full scientific name: Vibrio owensii Cano-Gómez et al. 2010
  • synonyms

    • @ref: 20215
    • synonym: Vibrio communis

@ref: 16678

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio owensii

full scientific name: Vibrio owensii Cano-Gómez et al. 2010

strain designation: DY05

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes85.128
6948099.46negative

Culture and growth conditions

culture medium

  • @ref: 16678
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16678positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 94.434

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 84.274

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
16678spiny lobster Panulirus ornatus larvaPanulirus ornatusNorth QueenslandAustraliaAUSAustralia and Oceania
67770Cultured larvae of the ornate spiny lobster P. ornatus in QueenslandAustraliaAUSAustralia and Oceania

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host#Arthropoda#Crustacea

taxonmaps

  • @ref: 69479
  • File name: preview.99_1344.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_74;98_81;99_1344&stattab=map
  • Last taxonomy: Vibrio
  • 16S sequence: GU018180
  • Sequence Identity:
  • Total samples: 345
  • soil counts: 4
  • aquatic counts: 169
  • animal counts: 159
  • plant counts: 13

Safety information

risk assessment

  • @ref: 16678
  • pathogenicity animal: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16678
  • description: VIbrio owensii CAIM 1854 = LMG 25443 strain DY05 16S ribosomal RNA gene, partial sequence
  • accession: GU018180
  • length: 1421
  • database: ena
  • NCBI tax ID: 1229493

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792VIbrio owensii CAIM 1854 = LMG 254431229493.3wgspatric1229493
66792Vibrio owensii CAIM 1854 = LMG 25443 strain DY051229493.5wgspatric1229493
67770Vibrio owensii CAIM 1854 = LMG 25443 CAIM 1854 = LMG 25443GCA_000400385contigncbi1229493
67770Vibrio owensii CAIM 1854 = LMG 25443 DY05GCA_000817815scaffoldncbi1229493

GC content

@refGC-contentmethod
1667845.3
6777045.3high performance liquid chromatography (HPLC)

External links

@ref: 16678

culture collection no.: DSM 23055, ACM 5300, JCM 16517, LMG 25443

straininfo link

@refpassport
20218http://www.straininfo.net/strains/853954
20218http://www.straininfo.net/strains/852904
20218http://www.straininfo.net/strains/852905
20218http://www.straininfo.net/strains/844390

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20002183Vibrio owensii sp. nov., isolated from cultured crustaceans in Australia.Cano-Gomez A, Goulden EF, Owens L, Hoj LFEMS Microbiol Lett10.1111/j.1574-6968.2009.01850.x2009Animals, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Palinuridae/*microbiology, Penaeidae/*microbiology, Phylogeny, Queensland, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vibrio/chemistry/*classification/genetics/*isolation & purificationGenetics
Genetics23710045Taxonomic revision of Harveyi clade bacteria (family Vibrionaceae) based on analysis of whole genome sequences.Urbanczyk H, Ogura Y, Hayashi TInt J Syst Evol Microbiol10.1099/ijs.0.051110-02013Bacterial Typing Techniques, DNA, Bacterial/genetics, *Genome, Bacterial, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vibrio/*classification/geneticsPhylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16678Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23055)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23055
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)