Strain identifier

BacDive ID: 17340

Type strain: Yes

Species: Vibrio porteresiae

Strain Designation: MSSRF30

Strain history: <- S. Nair, Swaminathan Research Foundation, Chennai

NCBI tax ID(s): 1123496 (strain), 435912 (species)

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General

@ref: 7976

BacDive-ID: 17340

DSM-Number: 19223

keywords: genome sequence, 16S sequence, Bacteria, Gram-negative, motile, rod-shaped

description: Vibrio porteresiae MSSRF30 is a Gram-negative, motile, rod-shaped bacterium that was isolated from Porteresia coarctata, wild rice relative from mangrove ecosystem.

NCBI tax id

NCBI tax idMatching level
1123496strain
435912species

strain history

  • @ref: 7976
  • history: <- S. Nair, Swaminathan Research Foundation, Chennai

doi: 10.13145/bacdive17340.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio porteresiae
  • full scientific name: Vibrio porteresiae Rameshkumar et al. 2008

@ref: 7976

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio porteresiae

full scientific name: Vibrio porteresiae Rameshkumar et al. 2008

strain designation: MSSRF30

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32512negative01-02 µm0.9 µmrod-shapedyes
125439negative98.4
125438negative99.5

pigmentation

  • @ref: 32512
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperature
32512positivegrowth20-37
32512positiveoptimum28

culture pH

@refabilitytypepHPH range
32512positivegrowth5.5-9alkaliphile
32512positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 125439
  • oxygen tolerance: obligate aerobe
  • confidence: 98.2

spore formation

@refspore formationconfidence
32512no
125439no98.2

halophily

@refsaltgrowthtested relationconcentration
32512NaClpositivegrowth0-5 %
32512NaClpositiveoptimum01-02 %

observation

  • @ref: 32512
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3251217057cellobiose+carbon source
3251228757fructose+carbon source
3251217234glucose+carbon source
3251217716lactose+carbon source
3251217306maltose+carbon source
3251229864mannitol+carbon source
3251226271proline+carbon source
3251226546rhamnose+carbon source
3251217814salicin+carbon source
3251217822serine+carbon source
3251218222xylose+carbon source

enzymes

@refvalueactivityec
32512catalase+1.11.1.6
32512cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 7976
  • sample type: Porteresia coarctata, wild rice relative from mangrove ecosystem
  • host species: Porteresia coarctata
  • geographic location: Pichavaram, Tamil Nadu
  • country: India
  • origin.country: IND
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mangrove
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_22994.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_11630;97_14065;98_17336;99_22994&stattab=map
  • Last taxonomy: Vibrio porteresiae subclade
  • 16S sequence: EF488079
  • Sequence Identity:
  • Total samples: 3466
  • soil counts: 71
  • aquatic counts: 1056
  • animal counts: 2279
  • plant counts: 60

Safety information

risk assessment

  • @ref: 7976
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7976
  • description: Vibrio porteresiae strain MSSRF30 16S ribosomal RNA gene, partial sequence
  • accession: EF488079
  • length: 1359
  • database: nuccore
  • NCBI tax ID: 1123496

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio porteresiae DSM 192232574179732draftimg1123496
66792Vibrio porteresiae DSM 19223 MSSRF30GCA_024347055completencbi1123496

GC content

  • @ref: 32512
  • GC-content: 44.4

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno99.5yes
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no93.635no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no70.617yes
125438spore-formingspore-formingAbility to form endo- or exosporesno87.07no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno98yes
125438motile2+flagellatedAbility to perform flagellated movementyes88.808no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno98.2
125439BacteriaNetmotilityAbility to perform movementyes74.2
125439BacteriaNetgram_stainReaction to gram-stainingnegative98.4
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe98.2

External links

@ref: 7976

culture collection no.: DSM 19223, LMG 24061

straininfo link

  • @ref: 86340
  • straininfo: 358861

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18599703Vibrio porteresiae sp. nov., a diazotrophic bacterium isolated from a mangrove-associated wild rice (Porteresia coarctata Tateoka).Rameshkumar N, Fukui Y, Sawabe T, Nair SInt J Syst Evol Microbiol10.1099/ijs.0.65604-02008Molecular Sequence Data, *Nitrogen Fixation, Oryza/*microbiology, Oxidoreductases/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity, Verbenaceae, Vibrio/*classification/genetics/isolation & purificationGenetics
Phylogeny20935089Vibrio stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata.Sheu SY, Jiang SR, Chen CA, Wang JT, Chen WMInt J Syst Evol Microbiol10.1099/ijs.0.026666-02010Animals, Anthozoa/*microbiology, Bacterial Proteins/genetics, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Taiwan, Temperature, Vibrio/*classification/genetics/*isolation & purification/physiologyGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7976Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19223)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19223
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32512Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2873228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86340Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID358861.1StrainInfo: A central database for resolving microbial strain identifiers
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1