Strain identifier

BacDive ID: 17337

Type strain: Yes

Species: Vibrio fortis

Strain history: CIP <- 2003, B. Gomez-Gil, CAIM <- 2002, F.L. Thompson, UGent - Fac. Wetenschappen - Vakgroep Biochemie en Microbiologie, Lab. Microbiol.<- J.Vandenberghe Univ. Ghent Belgium (Vibrio sp.) <- 1996 National Center for Marine and Aquaculture Research, Ecuador

NCBI tax ID(s): 212667 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 7931

BacDive-ID: 17337

DSM-Number: 19133

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped, animal pathogen

description: Vibrio fortis DSM 19133 is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from shrimp larvae.

NCBI tax id

  • NCBI tax id: 212667
  • Matching level: species

strain history

@refhistory
7931<- CAIM <- F. L. Thompson
119435CIP <- 2003, B. Gomez-Gil, CAIM <- 2002, F.L. Thompson, UGent - Fac. Wetenschappen - Vakgroep Biochemie en Microbiologie, Lab. Microbiol.<- J.Vandenberghe Univ. Ghent Belgium (Vibrio sp.) <- 1996 National Center for Marine and Aquaculture Research, Ecuador

doi: 10.13145/bacdive17337.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio fortis
  • full scientific name: Vibrio fortis Thompson et al. 2003

@ref: 7931

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio fortis

full scientific name: Vibrio fortis Thompson et al. 2003

type strain: yes

Morphology

cell morphology

  • @ref: 119435
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7931BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33910Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
119435CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
119435CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
7931positivegrowth28mesophilic
33910positivegrowth30mesophilic
61089positivegrowth30-37mesophilic
119435positivegrowth15-30
119435nogrowth5psychrophilic
119435nogrowth37mesophilic
119435nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
61089aerobe
119435facultative anaerobe

spore formation

  • @ref: 119435
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
119435NaClpositivegrowth2-10 %
119435NaClnogrowth0 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan+energy source
6836917632nitrate+reduction
11943516947citrate-carbon source
1194354853esculin+hydrolysis
11943517234glucose-fermentation
11943517716lactose-fermentation
11943517632nitrate+reduction
11943516301nitrite-reduction
119435132112sodium thiosulfate-builds gas from
11943517234glucose+degradation
11943517632nitrate+respiration

antibiotic resistance

  • @ref: 119435
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleyes
11943535581indoleyes

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole+
11943515688acetoin+
11943517234glucose-

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
119435oxidase+
119435beta-galactosidase-3.2.1.23
119435alcohol dehydrogenase-1.1.1.1
119435gelatinase+/-
119435amylase-
119435caseinase+3.4.21.50
119435catalase+1.11.1.6
119435tween esterase+
119435gamma-glutamyltransferase+2.3.2.2
119435lecithinase-
119435lipase+
119435lysine decarboxylase-4.1.1.18
119435ornithine decarboxylase-4.1.1.17
119435phenylalanine ammonia-lyase+4.3.1.24
119435protease+
119435tryptophan deaminase-
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119435-+++-+--+-++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
7931+++--++++-+-++++-++-+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119435+-+++--+-++--+----++-----------+-+---------------+---------++-+-+-------+--+--+++-----+--++++++----

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentsampling dateisolation date
7931shrimp (Litopenaeus vannamei) larvaeLitopenaeus vannameiEcuadorECUMiddle and South America
61089Shrimp larvae (Litopenaeus vannamei)EcuadorECUMiddle and South America1996
119435Animal, Shrimp larvae, Litopenaeus vannameiEcuadorECUMiddle and South America1996

isolation source categories

  • Cat1: #Host
  • Cat2: #Arthropoda
  • Cat3: #Crustacea

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
7931yes1Risk group (German classification)
1194352Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7931
  • description: Vibrio fortis partial 16S rRNA gene, type strain LMG 21557T
  • accession: AJ514916
  • length: 1505
  • database: ena
  • NCBI tax ID: 212667

Genome sequences

  • @ref: 66792
  • description: Vibrio fortis LMG 21557
  • accession: GCA_024347475
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 212667

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes88.616no
gram-positiveno98.928no
anaerobicno96.924yes
aerobicyes88.15yes
halophileyes54.315no
spore-formingno94.852no
motileyes89.83no
glucose-fermentyes85.39no
thermophileno99.37no
glucose-utilyes92.568yes

External links

@ref: 7931

culture collection no.: DSM 19133, CAIM 629, CIP 108196, LMG 21557, CCUG 56780

straininfo link

  • @ref: 86337
  • straininfo: 100124

literature

  • topic: Phylogeny
  • Pubmed-ID: 13130038
  • title: Vibrio fortis sp. nov. and Vibrio hepatarius sp. nov., isolated from aquatic animals and the marine environment.
  • authors: Thompson FL, Thompson CC, Hoste B, Vandemeulebroecke K, Gullian M, Swings J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02658-0
  • year: 2003
  • mesh: Animals, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Marine Biology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Vibrio/*classification/genetics/*isolation & purification/metabolism
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
7931Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19133)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19133
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33910Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5791
61089Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 56780)https://www.ccug.se/strain?id=56780
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
86337Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100124.1StrainInfo: A central database for resolving microbial strain identifiers
119435Curators of the CIPCollection of Institut Pasteur (CIP 108196)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108196