Strain identifier
BacDive ID: 17337
Type strain:
Species: Vibrio fortis
Strain history: CIP <- 2003, B. Gomez-Gil, CAIM <- 2002, F.L. Thompson, UGent - Fac. Wetenschappen - Vakgroep Biochemie en Microbiologie, Lab. Microbiol.<- J.Vandenberghe Univ. Ghent Belgium (Vibrio sp.) <- 1996 National Center for Marine and Aquaculture Research, Ecuador
NCBI tax ID(s): 212667 (species)
General
@ref: 7931
BacDive-ID: 17337
DSM-Number: 19133
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped, animal pathogen
description: Vibrio fortis DSM 19133 is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from shrimp larvae.
NCBI tax id
- NCBI tax id: 212667
- Matching level: species
strain history
@ref | history |
---|---|
7931 | <- CAIM <- F. L. Thompson |
119435 | CIP <- 2003, B. Gomez-Gil, CAIM <- 2002, F.L. Thompson, UGent - Fac. Wetenschappen - Vakgroep Biochemie en Microbiologie, Lab. Microbiol.<- J.Vandenberghe Univ. Ghent Belgium (Vibrio sp.) <- 1996 National Center for Marine and Aquaculture Research, Ecuador |
doi: 10.13145/bacdive17337.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio fortis
- full scientific name: Vibrio fortis Thompson et al. 2003
@ref: 7931
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales, not validated
family: Vibrionaceae
genus: Vibrio
species: Vibrio fortis
full scientific name: Vibrio fortis Thompson et al. 2003
type strain: yes
Morphology
cell morphology
- @ref: 119435
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
7931 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
33910 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
119435 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 | |
119435 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7931 | positive | growth | 28 | mesophilic |
33910 | positive | growth | 30 | mesophilic |
61089 | positive | growth | 30-37 | mesophilic |
119435 | positive | growth | 15-30 | |
119435 | no | growth | 5 | psychrophilic |
119435 | no | growth | 37 | mesophilic |
119435 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
61089 | aerobe |
119435 | facultative anaerobe |
spore formation
- @ref: 119435
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
119435 | NaCl | positive | growth | 2-10 % |
119435 | NaCl | no | growth | 0 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | + | assimilation |
68369 | 59640 | N-acetylglucosamine | + | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | + | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | + | hydrolysis |
68369 | 4853 | esculin | + | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | + | fermentation |
68369 | 27897 | tryptophan | + | energy source |
68369 | 17632 | nitrate | + | reduction |
119435 | 16947 | citrate | - | carbon source |
119435 | 4853 | esculin | + | hydrolysis |
119435 | 17234 | glucose | - | fermentation |
119435 | 17716 | lactose | - | fermentation |
119435 | 17632 | nitrate | + | reduction |
119435 | 16301 | nitrite | - | reduction |
119435 | 132112 | sodium thiosulfate | - | builds gas from |
119435 | 17234 | glucose | + | degradation |
119435 | 17632 | nitrate | + | respiration |
antibiotic resistance
- @ref: 119435
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: yes
- is resistant: no
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68369 | 35581 | indole | yes |
119435 | 35581 | indole | yes |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test | methylred-test |
---|---|---|---|---|---|
68369 | 35581 | indole | + | ||
119435 | 15688 | acetoin | + | ||
119435 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | + | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
119435 | oxidase | + | |
119435 | beta-galactosidase | - | 3.2.1.23 |
119435 | alcohol dehydrogenase | - | 1.1.1.1 |
119435 | gelatinase | +/- | |
119435 | amylase | - | |
119435 | caseinase | + | 3.4.21.50 |
119435 | catalase | + | 1.11.1.6 |
119435 | tween esterase | + | |
119435 | gamma-glutamyltransferase | + | 2.3.2.2 |
119435 | lecithinase | - | |
119435 | lipase | + | |
119435 | lysine decarboxylase | - | 4.1.1.18 |
119435 | ornithine decarboxylase | - | 4.1.1.17 |
119435 | phenylalanine ammonia-lyase | + | 4.3.1.24 |
119435 | protease | + | |
119435 | tryptophan deaminase | - | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119435 | - | + | + | + | - | + | - | - | + | - | + | + | - | - | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
7931 | + | + | + | - | - | + | + | + | + | - | + | - | + | + | + | + | - | + | + | - | + |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119435 | + | - | + | + | + | - | - | + | - | + | + | - | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | + | + | - | + | - | + | - | - | - | - | - | - | - | + | - | - | + | - | - | + | + | + | - | - | - | - | - | + | - | - | + | + | + | + | + | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | country | origin.country | continent | sampling date | isolation date |
---|---|---|---|---|---|---|---|
7931 | shrimp (Litopenaeus vannamei) larvae | Litopenaeus vannamei | Ecuador | ECU | Middle and South America | ||
61089 | Shrimp larvae (Litopenaeus vannamei) | Ecuador | ECU | Middle and South America | 1996 | ||
119435 | Animal, Shrimp larvae, Litopenaeus vannamei | Ecuador | ECU | Middle and South America | 1996 |
isolation source categories
- Cat1: #Host
- Cat2: #Arthropoda
- Cat3: #Crustacea
Safety information
risk assessment
@ref | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|
7931 | yes | 1 | Risk group (German classification) |
119435 | 2 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 7931
- description: Vibrio fortis partial 16S rRNA gene, type strain LMG 21557T
- accession: AJ514916
- length: 1505
- database: ena
- NCBI tax ID: 212667
Genome sequences
- @ref: 66792
- description: Vibrio fortis LMG 21557
- accession: GCA_024347475
- assembly level: complete
- database: ncbi
- NCBI tax ID: 212667
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | yes | 88.616 | no |
gram-positive | no | 98.928 | no |
anaerobic | no | 96.924 | yes |
aerobic | yes | 88.15 | yes |
halophile | yes | 54.315 | no |
spore-forming | no | 94.852 | no |
motile | yes | 89.83 | no |
glucose-ferment | yes | 85.39 | no |
thermophile | no | 99.37 | no |
glucose-util | yes | 92.568 | yes |
External links
@ref: 7931
culture collection no.: DSM 19133, CAIM 629, CIP 108196, LMG 21557, CCUG 56780
straininfo link
- @ref: 86337
- straininfo: 100124
literature
- topic: Phylogeny
- Pubmed-ID: 13130038
- title: Vibrio fortis sp. nov. and Vibrio hepatarius sp. nov., isolated from aquatic animals and the marine environment.
- authors: Thompson FL, Thompson CC, Hoste B, Vandemeulebroecke K, Gullian M, Swings J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.02658-0
- year: 2003
- mesh: Animals, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Marine Biology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Vibrio/*classification/genetics/*isolation & purification/metabolism
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
7931 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19133) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19133 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
33910 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5791 | ||
61089 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 56780) | https://www.ccug.se/strain?id=56780 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
68369 | Automatically annotated from API 20NE | |||
68382 | Automatically annotated from API zym | |||
86337 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100124.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
119435 | Curators of the CIP | Collection of Institut Pasteur (CIP 108196) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108196 |