Strain identifier
BacDive ID: 17336
Type strain:
Species: Vibrio coralliilyticus
Strain history: <- CCUG <- LMG <- E. Rosenberg, Tel Aviv Univ.; YB1
NCBI tax ID(s): 675814 (strain), 190893 (species)
General
@ref: 8124
BacDive-ID: 17336
DSM-Number: 19607
keywords: 16S sequence, Bacteria, mesophilic, animal pathogen
description: Vibrio coralliilyticus DSM 19607 is a mesophilic animal pathogen that was isolated from diseased coral .
NCBI tax id
NCBI tax id | Matching level |
---|---|
190893 | species |
675814 | strain |
strain history
- @ref: 8124
- history: <- CCUG <- LMG <- E. Rosenberg, Tel Aviv Univ.; YB1
doi: 10.13145/bacdive17336.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio coralliilyticus
- full scientific name: Vibrio coralliilyticus Ben-Haim et al. 2003
@ref: 8124
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales, not validated
family: Vibrionaceae
genus: Vibrio
species: Vibrio coralliilyticus
full scientific name: Vibrio coralliilyticus Ben-Haim et al. 2003
type strain: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8124 | REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) | yes | https://mediadive.dsmz.de/medium/514c | Name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
8124 | SEA WATER AGAR (DSMZ Medium 246) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium246.pdf | |
8124 | MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514f.pdf | |
34296 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8124 | positive | growth | 28 | mesophilic |
34296 | positive | growth | 25 | mesophilic |
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 17128 | adipate | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 5291 | gelatin | + | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 17634 | D-glucose | + | fermentation |
68369 | 17632 | nitrate | + | reduction |
68368 | 30849 | L-arabinose | - | fermentation |
68368 | 27613 | amygdalin | - | fermentation |
68368 | 28053 | melibiose | - | fermentation |
68368 | 17992 | sucrose | + | fermentation |
68368 | 62345 | L-rhamnose | - | fermentation |
68368 | 30911 | sorbitol | - | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | + | hydrolysis |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68374 | 18257 | ornithine | - | degradation |
68374 | 29016 | arginine | - | hydrolysis |
68374 | 25094 | lysine | - | degradation |
68374 | 16199 | urea | - | hydrolysis |
68374 | 18403 | L-arabitol | - | builds acid from |
68374 | 18024 | D-galacturonic acid | - | builds acid from |
68374 | Potassium 5-ketogluconate | - | builds acid from | |
68374 | 16899 | D-mannitol | - | builds acid from |
68374 | 17306 | maltose | + | builds acid from |
68374 | 15963 | ribitol | - | builds acid from |
68374 | 18394 | palatinose | - | builds acid from |
68374 | 15792 | malonate | - | assimilation |
68374 | 27897 | tryptophan | + | energy source |
68374 | 17634 | D-glucose | + | builds acid from |
68374 | 17992 | sucrose | + | builds acid from |
68374 | 30849 | L-arabinose | - | builds acid from |
68374 | 18333 | D-arabitol | - | builds acid from |
68374 | 27082 | trehalose | + | builds acid from |
68374 | 62345 | L-rhamnose | - | builds acid from |
68374 | 17268 | myo-inositol | - | builds acid from |
68374 | 17057 | cellobiose | - | builds acid from |
68374 | 30911 | sorbitol | - | builds acid from |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68374 | 35581 | indole | yes |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
- @ref: 68374
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
68374 | L-aspartate arylamidase | - | 3.4.11.21 |
68374 | alpha-maltosidase | - | |
68374 | alpha-galactosidase | - | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | + | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | - | 3.2.1.21 |
68374 | lipase | - | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | - | 4.1.1.18 |
68374 | arginine dihydrolase | - | 3.5.3.6 |
68374 | ornithine decarboxylase | - | 4.1.1.17 |
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | + | |
68369 | urease | - | 3.5.1.5 |
68368 | cytochrome oxidase | + | 1.9.3.1 |
68368 | gelatinase | + | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | beta-galactosidase | + | 3.2.1.23 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 58159 C12:0 2.6 12 58159 C14:0 5 14 58159 C15:0 0.8 15 58159 C16:0 13.5 16 58159 C17:0 1.2 17 58159 C18:0 0.4 18 58159 11 methyl 18:1 ω7c 0.8 18.081 58159 C12:0 3OH 2.1 13.455 58159 C13:0 iso 1.5 12.612 58159 C13:0 ISO 3OH 0.4 14.11 58159 C14:0 3OH/C16:1 ISO I 2.5 15.485 58159 C15:0 ISO 0.5 14.621 58159 C15:0 ISO 3OH 0.6 16.135 58159 C16:1 ω7c 31.1 15.819 58159 C16:1 ω7c/C15:0 ISO 2OH 6.3 15.85 58159 C16:1 ω9c 0.4 15.774 58159 C17:0 iso 1.8 16.629 58159 C17:1 ω8c 1.3 16.792 58159 C18:1 ω7c /12t/9t 25.4 17.824 58159 C18:1 ω9c 0.4 17.769 58159 C19:0 10-methyl 0.5 19.368 58159 Unidentified 0.8 15.272 58159 unknown 12.486 0.4 12.486 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8124 | + | + | - | - | - | - | - | - | + | + | + | + | + | - | - | - | + | - | - | - | + |
58159 | + | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | + | - | - | - | + |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8124 | + | - | + | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | + |
8124 | + | + | + | + | - | + | + | + | + | - | + | - | - | + | + | - | - | + | - | - | + |
8124 | + | + | + | - | - | - | + | + | + | - | + | + | + | + | + | + | - | + | + | - | + |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
58159 | - | - | - | - | - | - | - | - | + | - | - | + | - | - | - | - | + | - | + | + | + | - | - | - | - | + | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | sampling date | country |
---|---|---|---|---|---|
8124 | diseased coral (Pocillopora damicornis) | Pocillopora damicornis | Indian Ocean near Zanzibar | ||
58159 | Diseased coral (Pocillopora damicornis) | Indian Ocean near Zanzibar | 1999 | Indian Ocean |
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Cnidaria (Corals)
taxonmaps
- @ref: 69479
- File name: preview.99_1834.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_312;98_1449;99_1834&stattab=map
- Last taxonomy: Vibrio
- 16S sequence: AJ440005
- Sequence Identity:
- Total samples: 3801
- soil counts: 27
- aquatic counts: 3721
- animal counts: 50
- plant counts: 3
Safety information
risk assessment
- @ref: 8124
- pathogenicity animal: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Vibrio coralliilyticus ATCC BAA-450 strain LMG 20984 16S ribosomal RNA gene, partial sequence | JN039154 | 1465 | ena | 675814 |
8124 | Vibrio corallilyticus partial 16S rRNA gene, type strain LMG 20984 | AJ440005 | 1465 | ena | 675814 |
External links
@ref: 8124
culture collection no.: DSM 19607, ATCC BAA 450, CAIM 616, CCUG 48437, LMG 20984
straininfo link
- @ref: 86336
- straininfo: 85102
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 12656189 | Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis. | Ben-Haim Y, Thompson FL, Thompson CC, Cnockaert MC, Hoste B, Swings J, Rosenberg E | Int J Syst Evol Microbiol | 10.1099/ijs.0.02402-0 | 2003 | Anthozoa/*microbiology, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Microscopy, Electron, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Temperature, Vibrio/classification/genetics/metabolism/*pathogenicity | Genetics |
Phylogeny | 21057054 | Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios. | Moreira APB, Pereira N, Thompson FL | Int J Syst Evol Microbiol | 10.1099/ijs.0.023606-0 | 2010 | Bacteriological Techniques/methods, Base Composition, Chromatography, High Pressure Liquid, DNA, Bacterial/*chemistry/*genetics, Nucleic Acid Hybridization, Real-Time Polymerase Chain Reaction/*methods, Transition Temperature, Vibrio/*classification/*genetics | |
Phylogeny | 21296931 | Vibrio variabilis sp. nov. and Vibrio maritimus sp. nov., isolated from Palythoa caribaeorum. | Chimetto LA, Cleenwerck I, Moreira APB, Brocchi M, Willems A, De Vos P, Thompson FL | Int J Syst Evol Microbiol | 10.1099/ijs.0.026997-0 | 2011 | Animals, Anthozoa/*microbiology, Bacterial Proteins/genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Vibrio/*classification/genetics/*isolation & purification | Genetics |
Metabolism | 21642459 | Characterization of the self-cleaving effector protein NopE1 of Bradyrhizobium japonicum. | Schirrmeister J, Friedrich L, Wenzel M, Hoppe M, Wolf C, Gottfert M, Zehner S | J Bacteriol | 10.1128/JB.00437-11 | 2011 | Amino Acid Motifs, Amino Acid Sequence, Bacterial Proteins/*chemistry/genetics/*metabolism, Bradyrhizobium/chemistry/genetics/*metabolism, Molecular Sequence Data, *Protein Processing, Post-Translational, Protein Structure, Tertiary | Genetics |
Biotechnology | 23761335 | Chitin stimulates production of the antibiotic andrimid in a Vibrio coralliilyticus strain. | Wietz M, Mansson M, Gram L | Environ Microbiol Rep | 10.1111/j.1758-2229.2011.00259.x | 2011 | ||
Phylogeny | 23766013 | Phylogeny of the coral pathogen Vibrio coralliilyticus. | Pollock FJ, Wilson B, Johnson WR, Morris PJ, Willis BL, Bourne DG | Environ Microbiol Rep | 10.1111/j.1758-2229.2009.00131.x | 2010 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8124 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19607) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19607 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
34296 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5490 | ||||
58159 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 48437) | https://www.ccug.se/strain?id=48437 | |||
68368 | Automatically annotated from API 20E | |||||
68369 | Automatically annotated from API 20NE | |||||
68374 | Automatically annotated from API ID32E | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
86336 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID85102.1 | StrainInfo: A central database for resolving microbial strain identifiers |