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Strain identifier

BacDive ID: 17336

Type strain: Yes

Species: Vibrio coralliilyticus

Strain history: <- CCUG <- LMG <- E. Rosenberg, Tel Aviv Univ.; YB1

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8124

BacDive-ID: 17336

DSM-Number: 19607

keywords: 16S sequence, Bacteria, mesophilic, animal pathogen

description: Vibrio coralliilyticus DSM 19607 is a mesophilic animal pathogen that was isolated from diseased coral .

NCBI tax id

NCBI tax idMatching level
190893species
675814strain

strain history: <- CCUG <- LMG <- E. Rosenberg, Tel Aviv Univ.; YB1

doi: 10.13145/bacdive17336.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio coralliilyticus
  • full scientific name: Vibrio coralliilyticus Ben-Haim et al. 2003

@ref: 8124

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio coralliilyticus

full scientific name: Vibrio coralliilyticus Ben-Haim et al. 2003

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes77.211
6948099.293negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8124REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)yeshttps://mediadive.dsmz.de/medium/514cName: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
8124SEA WATER AGAR (DSMZ Medium 246)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium246.pdf
8124MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514f.pdf
34296Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)

culture temp

@refgrowthtypetemperaturerange
8124positivegrowth28mesophilic
34296positivegrowth25mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.449

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 77.366

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837430911sorbitol-builds acid from
6837417057cellobiose-builds acid from
6837417268myo-inositol-builds acid from
6837462345L-rhamnose-builds acid from
6837427082trehalose+builds acid from
6837418333D-arabitol-builds acid from
6837430849L-arabinose-builds acid from
6837417992sucrose+builds acid from
6837417634D-glucose+builds acid from
6837427897tryptophan+energy source
6837415792malonate-assimilation
6837418394palatinose-builds acid from
6837415963ribitol-builds acid from
6837417306maltose+builds acid from
6837416899D-mannitol-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837418024D-galacturonic acid-builds acid from
6837418403L-arabitol-builds acid from
6837416199urea-hydrolysis
6837425094lysine-degradation
6837429016arginine-hydrolysis
6837418257ornithine-degradation
6836917128adipate-assimilation
6836930849L-arabinose-assimilation
683695291gelatin+hydrolysis
6836916199urea-hydrolysis
6836917634D-glucose+fermentation
6836917632nitrate+reduction
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation

metabolite production

@refChebi-IDmetaboliteproduction
6837435581indoleyes
6836816136hydrogen sulfideno

metabolite tests

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase-
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369urease-3.5.1.5
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368beta-galactosidase+3.2.1.23

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    58159C12:02.612
    58159C14:0514
    58159C15:00.815
    58159C16:013.516
    58159C17:01.217
    58159C18:00.418
    5815911 methyl 18:1 ω7c0.818.081
    58159C12:0 3OH2.113.455
    58159C13:0 iso1.512.612
    58159C13:0 ISO 3OH0.414.11
    58159C14:0 3OH/C16:1 ISO I2.515.485
    58159C15:0 ISO0.514.621
    58159C15:0 ISO 3OH0.616.135
    58159C16:1 ω7c31.115.819
    58159C16:1 ω7c/C15:0 ISO 2OH6.315.85
    58159C16:1 ω9c0.415.774
    58159C17:0 iso1.816.629
    58159C17:1 ω8c1.316.792
    58159C18:1 ω7c /12t/9t25.417.824
    58159C18:1 ω9c0.417.769
    58159C19:0 10-methyl0.519.368
    58159Unidentified0.815.272
    58159unknown 12.4860.412.486
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
8124++------+++++---+---+
58159+---------++----+---+

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
8124++++-++++-+--++--+--+
8124+++---+++-++++++-++-+
8124+-+---++------------+

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
58159--------+--+----+-+++----+------

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationsampling datecountry
8124diseased coral (Pocillopora damicornis)Pocillopora damicornisIndian Ocean near Zanzibar
58159Diseased coral (Pocillopora damicornis)Indian Ocean near Zanzibar1999Indian Ocean

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Cnidaria (Corals)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1834.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_312;98_1449;99_1834&stattab=map
  • Last taxonomy: Vibrio
  • 16S sequence: AJ440005
  • Sequence Identity:
  • Total samples: 3801
  • soil counts: 27
  • aquatic counts: 3721
  • animal counts: 50
  • plant counts: 3

Safety information

risk assessment

  • @ref: 8124
  • pathogenicity animal: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Vibrio coralliilyticus ATCC BAA-450 strain LMG 20984 16S ribosomal RNA gene, partial sequenceJN0391541465ena675814
8124Vibrio corallilyticus partial 16S rRNA gene, type strain LMG 20984AJ4400051465ena675814

External links

@ref: 8124

culture collection no.: DSM 19607, ATCC BAA 450, CAIM 616, CCUG 48437, LMG 20984

straininfo link

@refpassport
20218http://www.straininfo.net/strains/724562
20218http://www.straininfo.net/strains/304236
20218http://www.straininfo.net/strains/622203
20218http://www.straininfo.net/strains/372719
20218http://www.straininfo.net/strains/275407

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12656189Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis.Ben-Haim Y, Thompson FL, Thompson CC, Cnockaert MC, Hoste B, Swings J, Rosenberg EInt J Syst Evol Microbiol10.1099/ijs.0.02402-02003Anthozoa/*microbiology, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Microscopy, Electron, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Temperature, Vibrio/classification/genetics/metabolism/*pathogenicityGenetics
Phylogeny21057054Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios.Moreira APB, Pereira N, Thompson FLInt J Syst Evol Microbiol10.1099/ijs.0.023606-02010Bacteriological Techniques/methods, Base Composition, Chromatography, High Pressure Liquid, DNA, Bacterial/*chemistry/*genetics, Nucleic Acid Hybridization, Real-Time Polymerase Chain Reaction/*methods, Transition Temperature, Vibrio/*classification/*genetics
Phylogeny21296931Vibrio variabilis sp. nov. and Vibrio maritimus sp. nov., isolated from Palythoa caribaeorum.Chimetto LA, Cleenwerck I, Moreira APB, Brocchi M, Willems A, De Vos P, Thompson FLInt J Syst Evol Microbiol10.1099/ijs.0.026997-02011Animals, Anthozoa/*microbiology, Bacterial Proteins/genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Vibrio/*classification/genetics/*isolation & purificationGenetics
Metabolism21642459Characterization of the self-cleaving effector protein NopE1 of Bradyrhizobium japonicum.Schirrmeister J, Friedrich L, Wenzel M, Hoppe M, Wolf C, Gottfert M, Zehner SJ Bacteriol10.1128/JB.00437-112011Amino Acid Motifs, Amino Acid Sequence, Bacterial Proteins/*chemistry/genetics/*metabolism, Bradyrhizobium/chemistry/genetics/*metabolism, Molecular Sequence Data, *Protein Processing, Post-Translational, Protein Structure, TertiaryGenetics
Biotechnology23761335Chitin stimulates production of the antibiotic andrimid in a Vibrio coralliilyticus strain.Wietz M, Mansson M, Gram LEnviron Microbiol Rep10.1111/j.1758-2229.2011.00259.x2011
Phylogeny23766013Phylogeny of the coral pathogen Vibrio coralliilyticus.Pollock FJ, Wilson B, Johnson WR, Morris PJ, Willis BL, Bourne DGEnviron Microbiol Rep10.1111/j.1758-2229.2009.00131.x2010

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8124Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19607)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19607
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34296Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5490
58159Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 48437)https://www.ccug.se/strain?id=48437
68368Automatically annotated from API 20E
68369Automatically annotated from API 20NE
68374Automatically annotated from API ID32E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)