Strain identifier

BacDive ID: 17334

Type strain: Yes

Species: Vibrio pectenicida

Strain history: CIP <- 1977, C. Lambert, IFREMER, Brest, France: strain A365, Vibrio scala

NCBI tax ID(s): 62763 (species)

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General

@ref: 8109

BacDive-ID: 17334

DSM-Number: 19585

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped, animal pathogen

description: Vibrio pectenicida DSM 19585 is a facultative anaerobe, mesophilic, Gram-negative animal pathogen that was isolated from larva of scallop .

NCBI tax id

  • NCBI tax id: 62763
  • Matching level: species

strain history

@refhistory
8109<- CIP <- C. Lambert, IFREMER
392171977, C. Lambert, IFREMER, Brest, France: strain A365, Vibrio scala
121643CIP <- 1977, C. Lambert, IFREMER, Brest, France: strain A365, Vibrio scala

doi: 10.13145/bacdive17334.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio pectenicida
  • full scientific name: Vibrio pectenicida Lambert et al. 1998

@ref: 8109

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio pectenicida

full scientific name: Vibrio pectenicida Lambert et al. 1998

type strain: yes

Morphology

cell morphology

  • @ref: 121643
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8109BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
39217Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
121643CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
8109positivegrowth28mesophilic
39217positivegrowth15psychrophilic
121643positivegrowth5-30
121643nogrowth37mesophilic
121643nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 121643
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
121643NaClpositivegrowth2-6 %
121643NaClnogrowth0 %
121643NaClnogrowth8 %
121643NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose-fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
12164317632nitrate+reduction
12164316301nitrite-reduction
12164317632nitrate+respiration

antibiotic resistance

  • @ref: 121643
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno
12164335581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6836935581indole-
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68368cytochrome oxidase+1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
121643oxidase+
121643beta-galactosidase-3.2.1.23
121643alcohol dehydrogenase-1.1.1.1
121643gelatinase+/-
121643amylase+
121643caseinase+3.4.21.50
121643catalase+1.11.1.6
121643gamma-glutamyltransferase+2.3.2.2
121643lecithinase+
121643lipase-
121643lysine decarboxylase-4.1.1.18
121643ornithine decarboxylase-4.1.1.17
121643phenylalanine ammonia-lyase-4.3.1.24
121643tryptophan deaminase-
121643urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121643-+++++--+-++-----+--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
8109-------------+------+

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
8109+-+---+-+----+---+--+

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentisolation date
8109larva of scallop (Pecten maximus)Pecten maximusBrestFranceFRAEurope
121643Animal, Scallop Pecten maximus, larvaBrestFranceFRAEurope1991

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Mollusca

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
8109yes1Risk group (German classification)
1216432Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Vibrio pectenicida strain CAIM 594 16S ribosomal RNA gene, partial sequenceEF094891557ena62763
8109Vibrio pectenicida 16S rRNA geneY138301474ena62763

External links

@ref: 8109

culture collection no.: DSM 19585, ATCC 700783, CIP 105190

straininfo link

  • @ref: 86334
  • straininfo: 13147

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny9731288Vibrio pectenicida sp. nov., a pathogen of scallop (Pecten maximus) larvae.Lambert C, Nicolas JL, Cilia V, Corre SInt J Syst Bacteriol10.1099/00207713-48-2-4811998Animals, Base Sequence, DNA, Bacterial/analysis, Molecular Sequence Data, Mollusca/*microbiology, Phenotype, Phylogeny, Vibrio/*classification/genetics/physiologyGenetics
Phylogeny24510976Vibrio ostreicida sp. nov., a new pathogen of bivalve larvae.Prado S, Dubert J, Romalde JL, Toranzo AE, Barja JLInt J Syst Evol Microbiol10.1099/ijs.0.051417-02014Animals, Bacterial Typing Techniques, Bivalvia/*microbiology, DNA, Bacterial/genetics, Genes, Bacterial, Larva/microbiology, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, Vibrio/*classification/genetics/isolation & purificationGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8109Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19585)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19585
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39217Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17182
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68368Automatically annotated from API 20E
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
86334Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13147.1StrainInfo: A central database for resolving microbial strain identifiers
121643Curators of the CIPCollection of Institut Pasteur (CIP 105190)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105190