Strain identifier

BacDive ID: 1733

Type strain: Yes

Species: Bifidobacterium animalis subsp. lactis

Strain Designation: UR1

Strain history: CIP <- 1997, DSMZ <- L. Meile <- U. Rüger: strain UR1

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3817

BacDive-ID: 1733

DSM-Number: 10140

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Bifidobacterium animalis subsp. lactis UR1 is an anaerobe, mesophilic bacterium that was isolated from yoghurt.

NCBI tax id

NCBI tax idMatching level
555970strain
302911subspecies

strain history

@refhistory
3817<- L. Meile <- U. Rüger, UR1
67770M. Matsumoto LKM501 <-- DSM 10140 <-- L. Meile <-- U. Rüger UR1.
120524CIP <- 1997, DSMZ <- L. Meile <- U. Rüger: strain UR1

doi: 10.13145/bacdive1733.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium animalis subsp. lactis
  • full scientific name: Bifidobacterium animalis subsp. lactis (Meile et al. 1997) Masco et al. 2004
  • synonyms

    • @ref: 20215
    • synonym: Bifidobacterium lactis

@ref: 3817

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium animalis subsp. lactis

full scientific name: Bifidobacterium animalis subsp. lactis (Meile et al. 1997) Masco et al. 2004

strain designation: UR1

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no93.095
69480100positive
120524nopositiverod-shaped

colony morphology

  • @ref: 120524

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3817BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)yeshttps://mediadive.dsmz.de/medium/58Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
41576MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
120524CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20

culture temp

@refgrowthtypetemperaturerange
3817positivegrowth37mesophilic
41576positivegrowth37mesophilic
53994positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
3817anaerobe
53994anaerobe
69480anaerobe98.388

spore formation

@refspore formationconfidence
69481no100
69480no99.999

murein

  • @ref: 3817
  • murein short key: A11.21
  • type: A3alpha L-Lys(L-Orn)-L-Ala(L-Ser)-L-Ala2

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose+builds acid from17634
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
120524esculin+hydrolysis4853
120524nitrate-reduction17632
120524nitrite-reduction16301
120524nitrate+respiration17632

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
120524oxidase-
120524beta-galactosidase-3.2.1.23
120524amylase-
120524caseinase-3.4.21.50
120524catalase-1.11.1.6
120524tween esterase-
120524lecithinase-
120524lipase-
120524urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    53994C12:02.512
    53994C14:026.614
    53994C16:027.916
    53994C18:03.118
    53994C13:0 3OH/C15:1 i I/H2.414.469
    53994C13:1 at 12-130.912.931
    53994C16:1 ω9c3.415.774
    53994C17:1 ω5c ISO0.716.461
    53994C18:1 ω7c /12t/9t0.717.824
    53994C18:1 ω9c14.517.769
    53994C18:1 ω9c DMA6.318.226
    53994C18:2 ω6,9c/C18:0 ANTE2.517.724
    53994C19:0 CYCLO ω9c8.518.87
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120524--++-+-+--++++-++---

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
3817----+++---++---------+-+-+++++++---+---+----------
3817----+++----+---------+/--+-+++++++---+---+----------
3817----+++---++---------+-+-++-++++---+---+----------
120524---+/-++----+-----------+/--++/--++++---+---+---------+/-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
3817yoghurtSwitzerlandCHEEurope
53994Yoghurt
67770Fermented milk
120524Yoghurt

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Dairy product

taxonmaps

  • @ref: 69479
  • File name: preview.99_377.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_259;97_283;98_316;99_377&stattab=map
  • Last taxonomy: Bifidobacterium animalis subclade
  • 16S sequence: LC071817
  • Sequence Identity:
  • Total samples: 132635
  • soil counts: 1941
  • aquatic counts: 4025
  • animal counts: 125902
  • plant counts: 767

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
38171Risk group (German classification)
1205241Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Bifidobacterium animalis subsp. lactis gene for 16S rRNA, partial sequence, strain: YIT 4121AB0501361529ena555970
20218Bifidobacterium animalis subsp. lactis gene for 16S rRNA, partial sequenceAB195798490ena302911
20218Bifidobacterium animalis subsp. lactis gene for 16S rRNA, partial sequence, strain: JCM 10602AB507074655ena302911
3817B.lactis DNA 16S and 23S ribosomal RNAX895132104ena555970
67770Bifidobacterium animalis subsp. lactis gene for 16S ribosomal RNA, partial sequence, strain: JCM 10602LC0718171436ena302911

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bifidobacterium animalis subsp. lactis DSM 10140555970.3completepatric555970
66792Bifidobacterium animalis lactis DSM 10140644736330completeimg555970
67770Bifidobacterium animalis subsp. lactis DSM 10140GCA_000022965completencbi555970

GC content

@refGC-contentmethod
381762
6777061.3high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveyes91.901no
anaerobicyes98.505yes
halophileno63.841no
spore-formingno96.493no
glucose-utilyes83.479no
thermophileno96.445yes
aerobicno97.881no
motileno93.815no
flagellatedno97.295no
glucose-fermentyes81.276no

External links

@ref: 3817

culture collection no.: CCUG 37979, DSM 10140, CIP 105265, JCM 10602, BCRC 17394, CGMCC 1.2226, LMG 18314, NRRL B-41405, VTT E-97847, WDCM 00223

straininfo link

  • @ref: 71380
  • straininfo: 11835

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11128064Bifidobacterium lactis Meile et al. 1997 is a subjective synonym of Bifidobacterium animalis (Mitsuoka 1969) Scardovi and Trovatelli 1974.Cai Y, Matsumoto M, Benno YMicrobiol Immunol10.1111/j.1348-0421.2000.tb02568.x2000Bifidobacterium/*classification/*genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Terminology as TopicGenetics
Metabolism11168730Selection of a Bifidobacterium strain to complement resistant starch in a synbiotic yoghurt.Crittenden RG, Morris LF, Harvey ML, Tran LT, Mitchell HL, Playne MJJ Appl Microbiol10.1046/j.1365-2672.2001.01240.x2001Bifidobacterium/genetics/*growth & development/metabolism, Bile/microbiology, Culture Media, Digestive System/microbiology, Humans, Hydrolysis, Oligosaccharides/metabolism, Plasmids, *Probiotics, Starch/*metabolism, Temperature, Yogurt/*microbiology, Zea mays/chemistry/metabolismCultivation
Phylogeny11375192Specific identification and targeted characterization of Bifidobacterium lactis from different environmental isolates by a combined multiplex-PCR approach.Ventura M, Reniero R, Zink RAppl Environ Microbiol10.1128/AEM.67.6.2760-2765.20012001Bacterial Typing Techniques, Bifidobacterium/classification/genetics/*isolation & purification, DNA Primers, DNA, Ribosomal/genetics/isolation & purification, Dairy Products/microbiology, *Environmental Microbiology, Food Microbiology, Humans, Infant, Infant Food/microbiology, Lactobacillus/genetics, Polymerase Chain Reaction/*methods, Probiotics, RNA, Ribosomal, 16S/genetics/isolation & purification, Sensitivity and Specificity, Species SpecificityEnzymology
Pathogenicity12406706Multiparametric flow cytometry and cell sorting for the assessment of viable, injured, and dead bifidobacterium cells during bile salt stress.Amor KB, Breeuwer P, Verbaarschot P, Rombouts FM, Akkermans AD, De Vos WM, Abee TAppl Environ Microbiol10.1128/AEM.68.11.5209-5216.20022002Bifidobacterium/cytology/*drug effects/enzymology/physiology, Bile Acids and Salts/*pharmacology, Cell Membrane Permeability/drug effects, Cell Separation, Esterases/metabolism, Flow Cytometry/*methods, Membrane Potentials/drug effects, ProbioticsStress
Phylogeny12450873Rapid identification, differentiation, and proposed new taxonomic classification of Bifidobacterium lactis.Ventura M, Zink RAppl Environ Microbiol10.1128/AEM.68.12.6429-6434.20022002Animals, Base Sequence, Bifidobacterium/*classification/genetics/isolation & purification, Electrophoresis, Gel, Pulsed-Field, Humans, Molecular Sequence Data, Polymerase Chain ReactionEnzymology
Enzymology12732943Identification of the gene for beta-fructofuranosidase of Bifidobacterium lactis DSM10140(T) and characterization of the enzyme expressed in Escherichia coli.Ehrmann MA, Korakli M, Vogel RFCurr Microbiol10.1007/s00284-002-3908-12003Amino Acid Sequence, Base Composition, Base Sequence, Bifidobacterium/enzymology/*genetics/metabolism, DNA, Bacterial/chemistry/genetics, Escherichia coli/genetics, Glycoside Hydrolases/*genetics/metabolism, Hydrogen-Ion Concentration, Kinetics, Molecular Sequence Data, Molecular Weight, Polymerase Chain Reaction, Recombinant Proteins/chemistry/genetics, Sequence Alignment, Sequence Analysis, DNA, Substrate Specificity, Sucrose/metabolism, beta-FructofuranosidaseMetabolism
Phylogeny15128574Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny.Ventura M, Canchaya C, van Sinderen D, Fitzgerald GF, Zink RAppl Environ Microbiol10.1128/AEM.70.5.3110-3121.20042004Bacterial Proteins/chemistry/*genetics, Bacterial Proton-Translocating ATPases/chemistry/*genetics, Base Sequence, Bifidobacterium/*classification/*genetics/growth & development, DNA, Ribosomal/analysis, Gene Expression Regulation, Bacterial, Lactobacillus/classification/genetics/growth & development, Molecular Sequence Data, *Operon, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Biotechnology15135587H+-ATPase activity in Bifidobacterium with special reference to acid tolerance.Matsumoto M, Ohishi H, Benno YInt J Food Microbiol10.1016/j.ijfoodmicro.2003.10.0092004Adaptation, Physiological, Adenosine Triphosphatases/*metabolism, Bifidobacterium/*enzymology/*physiology, Colony Count, Microbial, Food Handling/methods, Food Microbiology, *Hydrogen-Ion Concentration, Yogurt/microbiologyMetabolism
Metabolism15214632Hydrolysis of oligofructoses by the recombinant beta-fructofuranosidase from Bifidobacterium lactis.Janer C, Rohr LM, Pelaez C, Laloi M, Cleusix V, Requena T, Meile LSyst Appl Microbiol10.1078/0723-2020-002742004Bifidobacterium/*enzymology/growth & development, Chromosomes, Bacterial/genetics, Cloning, Molecular, DNA, Bacterial/chemistry/isolation & purification, Escherichia coli/genetics/metabolism, Fructans/metabolism, Gene Order, Hydrolysis, Inulin/metabolism, Molecular Sequence Data, Molecular Weight, Oligosaccharides/*metabolism, Open Reading Frames, Physical Chromosome Mapping, Recombinant Proteins/isolation & purification/metabolism, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Substrate Specificity, Sucrose/metabolism, beta-Fructofuranosidase/*metabolismEnzymology
Phylogeny15280282Polyphasic taxonomic analysis of Bifidobacterium animalis and Bifidobacterium lactis reveals relatedness at the subspecies level: reclassification of Bifidobacterium animalis as Bifidobacterium animalis subsp. animalis subsp. nov. and Bifidobacterium lactis as Bifidobacterium animalis subsp. lactis subsp. nov.Masco L, Ventura M, Zink R, Huys G, Swings JInt J Syst Evol Microbiol10.1099/ijs.0.03011-02004Animals, Bacterial Proteins/analysis/genetics, Bifidobacterium/*classification/genetics/growth & development/metabolism, Chaperonin 60/genetics, Colony Count, Microbial, DNA Fingerprinting, DNA, Bacterial/analysis/chemistry/isolation & purification, Genotype, Humans, Milk/metabolism, Molecular Sequence Data, Nucleic Acid Amplification Techniques, Phenotype, Phylogeny, Proteome, Sequence Analysis, DNA, Sequence HomologyGenetics
Enzymology15345383Characterization and heterologous expression of the oxalyl coenzyme A decarboxylase gene from Bifidobacterium lactis.Federici F, Vitali B, Gotti R, Pasca MR, Gobbi S, Peck AB, Brigidi PAppl Environ Microbiol10.1128/AEM.70.9.5066-5073.20042004Amino Acid Sequence, Base Sequence, Bifidobacterium/*enzymology/genetics, Carboxy-Lyases/*genetics/metabolism, DNA Primers, Molecular Sequence Data, Recombinant Fusion Proteins/metabolismMetabolism
Biotechnology15992622Use of traditional African fermented beverages as delivery vehicles for Bifidobacterium lactis DSM 10140.McMaster LD, Kokott SA, Reid SJ, Abratt VRInt J Food Microbiol10.1016/j.ijfoodmicro.2004.12.0132005Beverages/*microbiology, Bifidobacterium/*growth & development, Colony Count, Microbial, Drug Compounding, Fermentation, *Food Microbiology, Food Preservation, Humans, Hydrogen-Ion Concentration, *Probiotics, South Africa, Temperature, Time FactorsPathogenicity
Pathogenicity16464696Antibiotic susceptibility patterns and resistance genes of starter cultures and probiotic bacteria used in food.Kastner S, Perreten V, Bleuler H, Hugenschmidt G, Lacroix C, Meile LSyst Appl Microbiol10.1016/j.syapm.2005.07.0092005Animals, Anti-Bacterial Agents/*pharmacology, Bifidobacterium/*drug effects/genetics, Cultured Milk Products/*microbiology, *Food Microbiology, Food Technology/standards, Genes, Bacterial, Lactobacillus/*drug effects/genetics, Meat Products/*microbiology, Pediococcus/drug effects/genetics, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Staphylococcus/*drug effects/genetics, Switzerland, Tetracycline Resistance/geneticsBiotechnology
Metabolism19011052In vitro kinetic analysis of fermentation of prebiotic inulin-type fructans by Bifidobacterium species reveals four different phenotypes.Falony G, Lazidou K, Verschaeren A, Weckx S, Maes D, De Vuyst LAppl Environ Microbiol10.1128/AEM.01488-082008Acetic Acid/metabolism, Bifidobacterium/enzymology/growth & development/*metabolism, Cluster Analysis, Ethanol/metabolism, Fermentation, Formates/metabolism, Fructans/*metabolism, Fructose/metabolism, Inulin/metabolism, Lactic Acid/metabolism, Oligosaccharides/metabolism, Phenotype, beta-Fructofuranosidase/geneticsPhenotype
Genetics19376856Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04.Barrangou R, Briczinski EP, Traeger LL, Loquasto JR, Richards M, Horvath P, Coute-Monvoisin AC, Leyer G, Rendulic S, Steele JL, Broadbent JR, Oberg T, Dudley EG, Schuster S, Romero DA, Roberts RFJ Bacteriol10.1128/JB.00155-092009Bifidobacterium/*genetics, Genome, Bacterial/*genetics, Molecular Sequence Data, Polymorphism, Single Nucleotide/genetics, Sequence Analysis, DNA/*methodsTranscriptome
Pathogenicity22940065Prebiotic-non-digestible oligosaccharides preference of probiotic bifidobacteria and antimicrobial activity against Clostridium difficile.Kondepudi KK, Ambalam P, Nilsson I, Wadstrom T, Ljungh AAnaerobe10.1016/j.anaerobe.2012.08.0052012Acids/toxicity, Anti-Infective Agents/metabolism, *Antibiosis, Bifidobacterium/drug effects/metabolism/*physiology, Bile/metabolism, Clostridioides difficile/*drug effects/*growth & development, Humans, Microbial Viability/drug effects, Oligosaccharides/*metabolism, *Prebiotics, *ProbioticsMetabolism
Metabolism23332852Antimicrobial potential for the combination of bovine lactoferrin or its hydrolysate with lactoferrin-resistant probiotics against foodborne pathogens.Chen PW, Jheng TT, Shyu CL, Mao FCJ Dairy Sci10.3168/jds.2012-61122013Animals, Anti-Infective Agents/administration & dosage/*therapeutic use, Bifidobacterium/metabolism, Cattle, Enterococcus faecalis/drug effects, Escherichia coli/drug effects, Lactobacillus/metabolism, Lactobacillus acidophilus/metabolism, Lactobacillus rhamnosus/metabolism, Lactoferrin/administration & dosage/drug effects/*therapeutic use, Pediococcus/metabolism, Probiotics/administration & dosage/*therapeutic use, Protein Hydrolysates, Salmonella typhimurium/drug effectsPathogenicity
Pathogenicity23772066Genetic and physiological responses of Bifidobacterium animalis subsp. lactis to hydrogen peroxide stress.Oberg TS, Ward RE, Steele JL, Broadbent JRJ Bacteriol10.1128/JB.00279-132013Bacterial Proteins/genetics/*metabolism, Bifidobacterium/*drug effects/*metabolism, Gene Expression Regulation, Bacterial/*drug effects, Hydrogen Peroxide/*pharmacology, Stress, Physiological/*drug effectsMetabolism
Metabolism24072764Synergistic antibacterial efficacies of the combination of bovine lactoferrin or its hydrolysate with probiotic secretion in curbing the growth of meticillin-resistant Staphylococcus aureus.Chen PW, Jheng TT, Shyu CL, Mao FCJ Med Microbiol10.1099/jmm.0.052639-02013Animals, Anti-Bacterial Agents/*metabolism, Bifidobacterium/metabolism, Cattle, Humans, Lactobacillus fermentum/metabolism, Lactoferrin/*metabolism, Methicillin-Resistant Staphylococcus aureus/*immunology, Microbial Sensitivity Tests/methods, Probiotics/*metabolism, Protein Hydrolysates/*metabolism, Staphylococcal Infections/metabolismPathogenicity
25269440Bifidobacterium animalis subsp. lactis decreases urinary oxalate excretion in a mouse model of primary hyperoxaluria.Klimesova K, Whittamore JM, Hatch MUrolithiasis10.1007/s00240-014-0728-22014Animals, *Bifidobacterium, *Dietary Supplements, Disease Models, Animal, Hyperoxaluria, Primary/*diet therapy/*urine, Male, Mice, Mice, Inbred C57BL, Oxalates/*urine, *Oxalobacter formigenes
Pathogenicity26235937In Vitro Activity of Tea Tree Oil Vaginal Suppositories against Candida spp. and Probiotic Vaginal Microbiota.Di Vito M, Mattarelli P, Modesto M, Girolamo A, Ballardini M, Tamburro A, Meledandri M, Mondello FPhytother Res10.1002/ptr.54222015*Antifungal Agents, Candida/*drug effects, Candida albicans, Female, Humans, Lactobacillus, Microbiota/*drug effects, Middle Aged, Probiotics, Suppositories, *Tea Tree Oil, Vagina/*microbiology
Metabolism27680208The different effects of probiotics treatment on Salmonella-induced interleukin-8 response in intestinal epithelia cells via PI3K/Akt and NOD2 expression.Huang FC, Huang SCBenef Microbes10.3920/BM2015.01812016*Bifidobacterium, Caco-2 Cells, Epithelial Cells/immunology, Humans, Immunity, Innate, Immunity, Mucosal, Immunologic Factors, Interleukin-8/metabolism, Intestinal Mucosa/immunology, *Lactobacillus, Nod2 Signaling Adaptor Protein/metabolism, Phosphatidylinositol 3-Kinases/metabolism, Probiotics/*administration & dosage, Salmonella/*immunology, Salmonella Infections/*immunology/microbiology, Signal TransductionPathogenicity
Phylogeny28108391Diversity of the subspecies Bifidobacterium animalis subsp. lactis.Bunesova V, Killer J, Javurkova B, Vlkova E, Tejnecky V, Musilova S, Rada VAnaerobe10.1016/j.anaerobe.2017.01.0062017Animals, Bacterial Typing Techniques, Bifidobacterium animalis/chemistry/*classification/*genetics/isolation & purification/physiology, *Food Microbiology, *Genetic Variation, *Genotype, Mammals/*microbiology, Molecular Typing, *Phenotype, Phylogeny, Spectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationBiotechnology
28790996Gene Replacement and Fluorescent Labeling to Study the Functional Role of Exopolysaccharides in Bifidobacterium animalis subsp. lactis.Castro-Bravo N, Hidalgo-Cantabrana C, Rodriguez-Carvajal MA, Ruas-Madiedo P, Margolles AFront Microbiol10.3389/fmicb.2017.014052017
Metabolism29407393Functional cream cheese supplemented with Bifidobacterium animalis subsp. lactis DSM 10140 and Lactobacillus reuteri DSM 20016 and prebiotics.Speranza B, Campaniello D, Monacis N, Bevilacqua A, Sinigaglia M, Corbo MRFood Microbiol10.1016/j.fm.2017.11.0012017Bifidobacterium animalis/growth & development/*metabolism, Cheese/analysis/*microbiology, Food Additives/*analysis/metabolism, Functional Food/*analysis, Humans, Inulin/analysis/metabolism, Lactobacillus/growth & development/*metabolism, Lactulose/analysis/metabolism, Oligosaccharides/analysis/metabolism, Prebiotics/*analysis, Probiotics/*metabolism, TastePathogenicity
32796662Ultrasound-Attenuated Microorganisms Inoculated in Vegetable Beverages: Effect of Strains, Temperature, Ultrasound and Storage Conditions on the Performances of the Treatment.Campaniello D, Corbo MR, Speranza B, Sinigaglia M, Bevilacqua AMicroorganisms10.3390/microorganisms80812192020
Phylogeny32804603Bifidobacterium canis sp. nov., a novel member of the Bifidobacterium pseudolongum phylogenetic group isolated from faeces of a dog (Canis lupus f. familiaris).Neuzil-Bunesova V, Lugli GA, Modrackova N, Makovska M, Mrazek J, Mekadim C, Musilova S, Svobodova I, Spanek R, Ventura M, Killer JInt J Syst Evol Microbiol10.1099/ijsem.0.0043782020Aldehyde-Lyases, Animals, Bacterial Typing Techniques, Base Composition, Bifidobacterium/*classification, DNA, Bacterial/genetics, Dogs/*microbiology, Feces/microbiology, Genes, Bacterial, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
33178152Alginate- and Gelatin-Coated Apple Pieces as Carriers for Bifidobacterium animalis subsp. lactis DSM 10140.Campaniello D, Bevilacqua A, Speranza B, Sinigaglia M, Corbo MRFront Microbiol10.3389/fmicb.2020.5665962020
33520570Adhesion mechanisms of Bifidobacterium animalis subsp. lactis JCM 10602 to dietary fiber.Taniguchi M, Nambu M, Katakura Y, Yamasaki-Yashiki SBiosci Microbiota Food Health10.12938/bmfh.2020-0032020
33808862Marinated Sea Bream Fillets Enriched with Lactiplantibacillus plantarum and Bifidobacterium animalis subsp. lactis: Brine Optimization and Product Design.Speranza B, Bevilacqua A, Racioppo A, Campaniello D, Sinigaglia M, Corbo MRFoods10.3390/foods100306612021

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3817Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10140)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10140
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41576Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17265
53994Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 37979)https://www.ccug.se/strain?id=37979
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71380Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID11835.1StrainInfo: A central database for resolving microbial strain identifiers
120524Curators of the CIPCollection of Institut Pasteur (CIP 105265)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105265