Strain identifier
BacDive ID: 1733
Type strain:
Species: Bifidobacterium animalis subsp. lactis
Strain Designation: UR1
Strain history: CIP <- 1997, DSMZ <- L. Meile <- U. Rüger: strain UR1
NCBI tax ID(s): 555970 (strain), 302911 (subspecies)
General
@ref: 3817
BacDive-ID: 1733
DSM-Number: 10140
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Bifidobacterium animalis subsp. lactis UR1 is an anaerobe, mesophilic bacterium that was isolated from yoghurt.
NCBI tax id
NCBI tax id | Matching level |
---|---|
555970 | strain |
302911 | subspecies |
strain history
@ref | history |
---|---|
3817 | <- L. Meile <- U. Rüger, UR1 |
67770 | M. Matsumoto LKM501 <-- DSM 10140 <-- L. Meile <-- U. Rüger UR1. |
120524 | CIP <- 1997, DSMZ <- L. Meile <- U. Rüger: strain UR1 |
doi: 10.13145/bacdive1733.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium animalis subsp. lactis
- full scientific name: Bifidobacterium animalis subsp. lactis (Meile et al. 1997) Masco et al. 2004
synonyms
- @ref: 20215
- synonym: Bifidobacterium lactis
@ref: 3817
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium animalis subsp. lactis
full scientific name: Bifidobacterium animalis subsp. lactis (Meile et al. 1997) Masco et al. 2004
strain designation: UR1
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 93.095 | ||
69480 | 100 | positive | ||
120524 | no | positive | rod-shaped |
colony morphology
- @ref: 120524
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3817 | BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) | yes | https://mediadive.dsmz.de/medium/58 | Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water |
41576 | MEDIUM 20 - for Anaerobic bacteria | yes | Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml) | |
120524 | CIP Medium 20 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3817 | positive | growth | 37 | mesophilic |
41576 | positive | growth | 37 | mesophilic |
53994 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
3817 | anaerobe | |
53994 | anaerobe | |
69480 | anaerobe | 98.388 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.999 |
murein
- @ref: 3817
- murein short key: A11.21
- type: A3alpha L-Lys(L-Orn)-L-Ala(L-Ser)-L-Ala2
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | + | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | + | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | + | builds acid from | 17992 |
68371 | melibiose | + | builds acid from | 28053 |
68371 | lactose | + | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | + | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
120524 | esculin | + | hydrolysis | 4853 |
120524 | nitrate | - | reduction | 17632 |
120524 | nitrite | - | reduction | 16301 |
120524 | nitrate | + | respiration | 17632 |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
120524 | oxidase | - | |
120524 | beta-galactosidase | - | 3.2.1.23 |
120524 | amylase | - | |
120524 | caseinase | - | 3.4.21.50 |
120524 | catalase | - | 1.11.1.6 |
120524 | tween esterase | - | |
120524 | lecithinase | - | |
120524 | lipase | - | |
120524 | urease | - | 3.5.1.5 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 53994 C12:0 2.5 12 53994 C14:0 26.6 14 53994 C16:0 27.9 16 53994 C18:0 3.1 18 53994 C13:0 3OH/C15:1 i I/H 2.4 14.469 53994 C13:1 at 12-13 0.9 12.931 53994 C16:1 ω9c 3.4 15.774 53994 C17:1 ω5c ISO 0.7 16.461 53994 C18:1 ω7c /12t/9t 0.7 17.824 53994 C18:1 ω9c 14.5 17.769 53994 C18:1 ω9c DMA 6.3 18.226 53994 C18:2 ω6,9c/C18:0 ANTE 2.5 17.724 53994 C19:0 CYCLO ω9c 8.5 18.87 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120524 | - | - | + | + | - | + | - | + | - | - | + | + | + | + | - | + | + | - | - | - |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3817 | - | - | - | - | + | + | + | - | - | - | + | + | - | - | - | - | - | - | - | - | - | + | - | + | - | + | + | + | + | + | + | + | - | - | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - |
3817 | - | - | - | - | + | + | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - | +/- | - | + | - | + | + | + | + | + | + | + | - | - | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - |
3817 | - | - | - | - | + | + | + | - | - | - | + | + | - | - | - | - | - | - | - | - | - | + | - | + | - | + | + | - | + | + | + | + | - | - | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - |
120524 | - | - | - | +/- | + | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | +/- | - | + | +/- | - | + | + | + | + | - | - | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | +/- |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
3817 | yoghurt | Switzerland | CHE | Europe |
53994 | Yoghurt | |||
67770 | Fermented milk | |||
120524 | Yoghurt |
isolation source categories
- Cat1: #Engineered
- Cat2: #Food production
- Cat3: #Dairy product
taxonmaps
- @ref: 69479
- File name: preview.99_377.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_259;97_283;98_316;99_377&stattab=map
- Last taxonomy: Bifidobacterium animalis subclade
- 16S sequence: LC071817
- Sequence Identity:
- Total samples: 132635
- soil counts: 1941
- aquatic counts: 4025
- animal counts: 125902
- plant counts: 767
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
3817 | 1 | Risk group (German classification) |
120524 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Bifidobacterium animalis subsp. lactis gene for 16S rRNA, partial sequence, strain: YIT 4121 | AB050136 | 1529 | ena | 555970 |
20218 | Bifidobacterium animalis subsp. lactis gene for 16S rRNA, partial sequence | AB195798 | 490 | ena | 302911 |
20218 | Bifidobacterium animalis subsp. lactis gene for 16S rRNA, partial sequence, strain: JCM 10602 | AB507074 | 655 | ena | 302911 |
3817 | B.lactis DNA 16S and 23S ribosomal RNA | X89513 | 2104 | ena | 555970 |
67770 | Bifidobacterium animalis subsp. lactis gene for 16S ribosomal RNA, partial sequence, strain: JCM 10602 | LC071817 | 1436 | ena | 302911 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bifidobacterium animalis subsp. lactis DSM 10140 | 555970.3 | complete | patric | 555970 |
66792 | Bifidobacterium animalis lactis DSM 10140 | 644736330 | complete | img | 555970 |
67770 | Bifidobacterium animalis subsp. lactis DSM 10140 | GCA_000022965 | complete | ncbi | 555970 |
GC content
@ref | GC-content | method |
---|---|---|
3817 | 62 | |
67770 | 61.3 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
gram-positive | yes | 91.901 | no |
anaerobic | yes | 98.505 | yes |
halophile | no | 63.841 | no |
spore-forming | no | 96.493 | no |
glucose-util | yes | 83.479 | no |
thermophile | no | 96.445 | yes |
aerobic | no | 97.881 | no |
motile | no | 93.815 | no |
flagellated | no | 97.295 | no |
glucose-ferment | yes | 81.276 | no |
External links
@ref: 3817
culture collection no.: CCUG 37979, DSM 10140, CIP 105265, JCM 10602, BCRC 17394, CGMCC 1.2226, LMG 18314, NRRL B-41405, VTT E-97847, WDCM 00223
straininfo link
- @ref: 71380
- straininfo: 11835
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 11128064 | Bifidobacterium lactis Meile et al. 1997 is a subjective synonym of Bifidobacterium animalis (Mitsuoka 1969) Scardovi and Trovatelli 1974. | Cai Y, Matsumoto M, Benno Y | Microbiol Immunol | 10.1111/j.1348-0421.2000.tb02568.x | 2000 | Bifidobacterium/*classification/*genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Terminology as Topic | Genetics |
Metabolism | 11168730 | Selection of a Bifidobacterium strain to complement resistant starch in a synbiotic yoghurt. | Crittenden RG, Morris LF, Harvey ML, Tran LT, Mitchell HL, Playne MJ | J Appl Microbiol | 10.1046/j.1365-2672.2001.01240.x | 2001 | Bifidobacterium/genetics/*growth & development/metabolism, Bile/microbiology, Culture Media, Digestive System/microbiology, Humans, Hydrolysis, Oligosaccharides/metabolism, Plasmids, *Probiotics, Starch/*metabolism, Temperature, Yogurt/*microbiology, Zea mays/chemistry/metabolism | Cultivation |
Phylogeny | 11375192 | Specific identification and targeted characterization of Bifidobacterium lactis from different environmental isolates by a combined multiplex-PCR approach. | Ventura M, Reniero R, Zink R | Appl Environ Microbiol | 10.1128/AEM.67.6.2760-2765.2001 | 2001 | Bacterial Typing Techniques, Bifidobacterium/classification/genetics/*isolation & purification, DNA Primers, DNA, Ribosomal/genetics/isolation & purification, Dairy Products/microbiology, *Environmental Microbiology, Food Microbiology, Humans, Infant, Infant Food/microbiology, Lactobacillus/genetics, Polymerase Chain Reaction/*methods, Probiotics, RNA, Ribosomal, 16S/genetics/isolation & purification, Sensitivity and Specificity, Species Specificity | Enzymology |
Pathogenicity | 12406706 | Multiparametric flow cytometry and cell sorting for the assessment of viable, injured, and dead bifidobacterium cells during bile salt stress. | Amor KB, Breeuwer P, Verbaarschot P, Rombouts FM, Akkermans AD, De Vos WM, Abee T | Appl Environ Microbiol | 10.1128/AEM.68.11.5209-5216.2002 | 2002 | Bifidobacterium/cytology/*drug effects/enzymology/physiology, Bile Acids and Salts/*pharmacology, Cell Membrane Permeability/drug effects, Cell Separation, Esterases/metabolism, Flow Cytometry/*methods, Membrane Potentials/drug effects, Probiotics | Stress |
Phylogeny | 12450873 | Rapid identification, differentiation, and proposed new taxonomic classification of Bifidobacterium lactis. | Ventura M, Zink R | Appl Environ Microbiol | 10.1128/AEM.68.12.6429-6434.2002 | 2002 | Animals, Base Sequence, Bifidobacterium/*classification/genetics/isolation & purification, Electrophoresis, Gel, Pulsed-Field, Humans, Molecular Sequence Data, Polymerase Chain Reaction | Enzymology |
Enzymology | 12732943 | Identification of the gene for beta-fructofuranosidase of Bifidobacterium lactis DSM10140(T) and characterization of the enzyme expressed in Escherichia coli. | Ehrmann MA, Korakli M, Vogel RF | Curr Microbiol | 10.1007/s00284-002-3908-1 | 2003 | Amino Acid Sequence, Base Composition, Base Sequence, Bifidobacterium/enzymology/*genetics/metabolism, DNA, Bacterial/chemistry/genetics, Escherichia coli/genetics, Glycoside Hydrolases/*genetics/metabolism, Hydrogen-Ion Concentration, Kinetics, Molecular Sequence Data, Molecular Weight, Polymerase Chain Reaction, Recombinant Proteins/chemistry/genetics, Sequence Alignment, Sequence Analysis, DNA, Substrate Specificity, Sucrose/metabolism, beta-Fructofuranosidase | Metabolism |
Phylogeny | 15128574 | Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny. | Ventura M, Canchaya C, van Sinderen D, Fitzgerald GF, Zink R | Appl Environ Microbiol | 10.1128/AEM.70.5.3110-3121.2004 | 2004 | Bacterial Proteins/chemistry/*genetics, Bacterial Proton-Translocating ATPases/chemistry/*genetics, Base Sequence, Bifidobacterium/*classification/*genetics/growth & development, DNA, Ribosomal/analysis, Gene Expression Regulation, Bacterial, Lactobacillus/classification/genetics/growth & development, Molecular Sequence Data, *Operon, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Biotechnology | 15135587 | H+-ATPase activity in Bifidobacterium with special reference to acid tolerance. | Matsumoto M, Ohishi H, Benno Y | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2003.10.009 | 2004 | Adaptation, Physiological, Adenosine Triphosphatases/*metabolism, Bifidobacterium/*enzymology/*physiology, Colony Count, Microbial, Food Handling/methods, Food Microbiology, *Hydrogen-Ion Concentration, Yogurt/microbiology | Metabolism |
Metabolism | 15214632 | Hydrolysis of oligofructoses by the recombinant beta-fructofuranosidase from Bifidobacterium lactis. | Janer C, Rohr LM, Pelaez C, Laloi M, Cleusix V, Requena T, Meile L | Syst Appl Microbiol | 10.1078/0723-2020-00274 | 2004 | Bifidobacterium/*enzymology/growth & development, Chromosomes, Bacterial/genetics, Cloning, Molecular, DNA, Bacterial/chemistry/isolation & purification, Escherichia coli/genetics/metabolism, Fructans/metabolism, Gene Order, Hydrolysis, Inulin/metabolism, Molecular Sequence Data, Molecular Weight, Oligosaccharides/*metabolism, Open Reading Frames, Physical Chromosome Mapping, Recombinant Proteins/isolation & purification/metabolism, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Substrate Specificity, Sucrose/metabolism, beta-Fructofuranosidase/*metabolism | Enzymology |
Phylogeny | 15280282 | Polyphasic taxonomic analysis of Bifidobacterium animalis and Bifidobacterium lactis reveals relatedness at the subspecies level: reclassification of Bifidobacterium animalis as Bifidobacterium animalis subsp. animalis subsp. nov. and Bifidobacterium lactis as Bifidobacterium animalis subsp. lactis subsp. nov. | Masco L, Ventura M, Zink R, Huys G, Swings J | Int J Syst Evol Microbiol | 10.1099/ijs.0.03011-0 | 2004 | Animals, Bacterial Proteins/analysis/genetics, Bifidobacterium/*classification/genetics/growth & development/metabolism, Chaperonin 60/genetics, Colony Count, Microbial, DNA Fingerprinting, DNA, Bacterial/analysis/chemistry/isolation & purification, Genotype, Humans, Milk/metabolism, Molecular Sequence Data, Nucleic Acid Amplification Techniques, Phenotype, Phylogeny, Proteome, Sequence Analysis, DNA, Sequence Homology | Genetics |
Enzymology | 15345383 | Characterization and heterologous expression of the oxalyl coenzyme A decarboxylase gene from Bifidobacterium lactis. | Federici F, Vitali B, Gotti R, Pasca MR, Gobbi S, Peck AB, Brigidi P | Appl Environ Microbiol | 10.1128/AEM.70.9.5066-5073.2004 | 2004 | Amino Acid Sequence, Base Sequence, Bifidobacterium/*enzymology/genetics, Carboxy-Lyases/*genetics/metabolism, DNA Primers, Molecular Sequence Data, Recombinant Fusion Proteins/metabolism | Metabolism |
Biotechnology | 15992622 | Use of traditional African fermented beverages as delivery vehicles for Bifidobacterium lactis DSM 10140. | McMaster LD, Kokott SA, Reid SJ, Abratt VR | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2004.12.013 | 2005 | Beverages/*microbiology, Bifidobacterium/*growth & development, Colony Count, Microbial, Drug Compounding, Fermentation, *Food Microbiology, Food Preservation, Humans, Hydrogen-Ion Concentration, *Probiotics, South Africa, Temperature, Time Factors | Pathogenicity |
Pathogenicity | 16464696 | Antibiotic susceptibility patterns and resistance genes of starter cultures and probiotic bacteria used in food. | Kastner S, Perreten V, Bleuler H, Hugenschmidt G, Lacroix C, Meile L | Syst Appl Microbiol | 10.1016/j.syapm.2005.07.009 | 2005 | Animals, Anti-Bacterial Agents/*pharmacology, Bifidobacterium/*drug effects/genetics, Cultured Milk Products/*microbiology, *Food Microbiology, Food Technology/standards, Genes, Bacterial, Lactobacillus/*drug effects/genetics, Meat Products/*microbiology, Pediococcus/drug effects/genetics, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Staphylococcus/*drug effects/genetics, Switzerland, Tetracycline Resistance/genetics | Biotechnology |
Metabolism | 19011052 | In vitro kinetic analysis of fermentation of prebiotic inulin-type fructans by Bifidobacterium species reveals four different phenotypes. | Falony G, Lazidou K, Verschaeren A, Weckx S, Maes D, De Vuyst L | Appl Environ Microbiol | 10.1128/AEM.01488-08 | 2008 | Acetic Acid/metabolism, Bifidobacterium/enzymology/growth & development/*metabolism, Cluster Analysis, Ethanol/metabolism, Fermentation, Formates/metabolism, Fructans/*metabolism, Fructose/metabolism, Inulin/metabolism, Lactic Acid/metabolism, Oligosaccharides/metabolism, Phenotype, beta-Fructofuranosidase/genetics | Phenotype |
Genetics | 19376856 | Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04. | Barrangou R, Briczinski EP, Traeger LL, Loquasto JR, Richards M, Horvath P, Coute-Monvoisin AC, Leyer G, Rendulic S, Steele JL, Broadbent JR, Oberg T, Dudley EG, Schuster S, Romero DA, Roberts RF | J Bacteriol | 10.1128/JB.00155-09 | 2009 | Bifidobacterium/*genetics, Genome, Bacterial/*genetics, Molecular Sequence Data, Polymorphism, Single Nucleotide/genetics, Sequence Analysis, DNA/*methods | Transcriptome |
Pathogenicity | 22940065 | Prebiotic-non-digestible oligosaccharides preference of probiotic bifidobacteria and antimicrobial activity against Clostridium difficile. | Kondepudi KK, Ambalam P, Nilsson I, Wadstrom T, Ljungh A | Anaerobe | 10.1016/j.anaerobe.2012.08.005 | 2012 | Acids/toxicity, Anti-Infective Agents/metabolism, *Antibiosis, Bifidobacterium/drug effects/metabolism/*physiology, Bile/metabolism, Clostridioides difficile/*drug effects/*growth & development, Humans, Microbial Viability/drug effects, Oligosaccharides/*metabolism, *Prebiotics, *Probiotics | Metabolism |
Metabolism | 23332852 | Antimicrobial potential for the combination of bovine lactoferrin or its hydrolysate with lactoferrin-resistant probiotics against foodborne pathogens. | Chen PW, Jheng TT, Shyu CL, Mao FC | J Dairy Sci | 10.3168/jds.2012-6112 | 2013 | Animals, Anti-Infective Agents/administration & dosage/*therapeutic use, Bifidobacterium/metabolism, Cattle, Enterococcus faecalis/drug effects, Escherichia coli/drug effects, Lactobacillus/metabolism, Lactobacillus acidophilus/metabolism, Lactobacillus rhamnosus/metabolism, Lactoferrin/administration & dosage/drug effects/*therapeutic use, Pediococcus/metabolism, Probiotics/administration & dosage/*therapeutic use, Protein Hydrolysates, Salmonella typhimurium/drug effects | Pathogenicity |
Pathogenicity | 23772066 | Genetic and physiological responses of Bifidobacterium animalis subsp. lactis to hydrogen peroxide stress. | Oberg TS, Ward RE, Steele JL, Broadbent JR | J Bacteriol | 10.1128/JB.00279-13 | 2013 | Bacterial Proteins/genetics/*metabolism, Bifidobacterium/*drug effects/*metabolism, Gene Expression Regulation, Bacterial/*drug effects, Hydrogen Peroxide/*pharmacology, Stress, Physiological/*drug effects | Metabolism |
Metabolism | 24072764 | Synergistic antibacterial efficacies of the combination of bovine lactoferrin or its hydrolysate with probiotic secretion in curbing the growth of meticillin-resistant Staphylococcus aureus. | Chen PW, Jheng TT, Shyu CL, Mao FC | J Med Microbiol | 10.1099/jmm.0.052639-0 | 2013 | Animals, Anti-Bacterial Agents/*metabolism, Bifidobacterium/metabolism, Cattle, Humans, Lactobacillus fermentum/metabolism, Lactoferrin/*metabolism, Methicillin-Resistant Staphylococcus aureus/*immunology, Microbial Sensitivity Tests/methods, Probiotics/*metabolism, Protein Hydrolysates/*metabolism, Staphylococcal Infections/metabolism | Pathogenicity |
25269440 | Bifidobacterium animalis subsp. lactis decreases urinary oxalate excretion in a mouse model of primary hyperoxaluria. | Klimesova K, Whittamore JM, Hatch M | Urolithiasis | 10.1007/s00240-014-0728-2 | 2014 | Animals, *Bifidobacterium, *Dietary Supplements, Disease Models, Animal, Hyperoxaluria, Primary/*diet therapy/*urine, Male, Mice, Mice, Inbred C57BL, Oxalates/*urine, *Oxalobacter formigenes | ||
Pathogenicity | 26235937 | In Vitro Activity of Tea Tree Oil Vaginal Suppositories against Candida spp. and Probiotic Vaginal Microbiota. | Di Vito M, Mattarelli P, Modesto M, Girolamo A, Ballardini M, Tamburro A, Meledandri M, Mondello F | Phytother Res | 10.1002/ptr.5422 | 2015 | *Antifungal Agents, Candida/*drug effects, Candida albicans, Female, Humans, Lactobacillus, Microbiota/*drug effects, Middle Aged, Probiotics, Suppositories, *Tea Tree Oil, Vagina/*microbiology | |
Metabolism | 27680208 | The different effects of probiotics treatment on Salmonella-induced interleukin-8 response in intestinal epithelia cells via PI3K/Akt and NOD2 expression. | Huang FC, Huang SC | Benef Microbes | 10.3920/BM2015.0181 | 2016 | *Bifidobacterium, Caco-2 Cells, Epithelial Cells/immunology, Humans, Immunity, Innate, Immunity, Mucosal, Immunologic Factors, Interleukin-8/metabolism, Intestinal Mucosa/immunology, *Lactobacillus, Nod2 Signaling Adaptor Protein/metabolism, Phosphatidylinositol 3-Kinases/metabolism, Probiotics/*administration & dosage, Salmonella/*immunology, Salmonella Infections/*immunology/microbiology, Signal Transduction | Pathogenicity |
Phylogeny | 28108391 | Diversity of the subspecies Bifidobacterium animalis subsp. lactis. | Bunesova V, Killer J, Javurkova B, Vlkova E, Tejnecky V, Musilova S, Rada V | Anaerobe | 10.1016/j.anaerobe.2017.01.006 | 2017 | Animals, Bacterial Typing Techniques, Bifidobacterium animalis/chemistry/*classification/*genetics/isolation & purification/physiology, *Food Microbiology, *Genetic Variation, *Genotype, Mammals/*microbiology, Molecular Typing, *Phenotype, Phylogeny, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization | Biotechnology |
28790996 | Gene Replacement and Fluorescent Labeling to Study the Functional Role of Exopolysaccharides in Bifidobacterium animalis subsp. lactis. | Castro-Bravo N, Hidalgo-Cantabrana C, Rodriguez-Carvajal MA, Ruas-Madiedo P, Margolles A | Front Microbiol | 10.3389/fmicb.2017.01405 | 2017 | |||
Metabolism | 29407393 | Functional cream cheese supplemented with Bifidobacterium animalis subsp. lactis DSM 10140 and Lactobacillus reuteri DSM 20016 and prebiotics. | Speranza B, Campaniello D, Monacis N, Bevilacqua A, Sinigaglia M, Corbo MR | Food Microbiol | 10.1016/j.fm.2017.11.001 | 2017 | Bifidobacterium animalis/growth & development/*metabolism, Cheese/analysis/*microbiology, Food Additives/*analysis/metabolism, Functional Food/*analysis, Humans, Inulin/analysis/metabolism, Lactobacillus/growth & development/*metabolism, Lactulose/analysis/metabolism, Oligosaccharides/analysis/metabolism, Prebiotics/*analysis, Probiotics/*metabolism, Taste | Pathogenicity |
32796662 | Ultrasound-Attenuated Microorganisms Inoculated in Vegetable Beverages: Effect of Strains, Temperature, Ultrasound and Storage Conditions on the Performances of the Treatment. | Campaniello D, Corbo MR, Speranza B, Sinigaglia M, Bevilacqua A | Microorganisms | 10.3390/microorganisms8081219 | 2020 | |||
Phylogeny | 32804603 | Bifidobacterium canis sp. nov., a novel member of the Bifidobacterium pseudolongum phylogenetic group isolated from faeces of a dog (Canis lupus f. familiaris). | Neuzil-Bunesova V, Lugli GA, Modrackova N, Makovska M, Mrazek J, Mekadim C, Musilova S, Svobodova I, Spanek R, Ventura M, Killer J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004378 | 2020 | Aldehyde-Lyases, Animals, Bacterial Typing Techniques, Base Composition, Bifidobacterium/*classification, DNA, Bacterial/genetics, Dogs/*microbiology, Feces/microbiology, Genes, Bacterial, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
33178152 | Alginate- and Gelatin-Coated Apple Pieces as Carriers for Bifidobacterium animalis subsp. lactis DSM 10140. | Campaniello D, Bevilacqua A, Speranza B, Sinigaglia M, Corbo MR | Front Microbiol | 10.3389/fmicb.2020.566596 | 2020 | |||
33520570 | Adhesion mechanisms of Bifidobacterium animalis subsp. lactis JCM 10602 to dietary fiber. | Taniguchi M, Nambu M, Katakura Y, Yamasaki-Yashiki S | Biosci Microbiota Food Health | 10.12938/bmfh.2020-003 | 2020 | |||
33808862 | Marinated Sea Bream Fillets Enriched with Lactiplantibacillus plantarum and Bifidobacterium animalis subsp. lactis: Brine Optimization and Product Design. | Speranza B, Bevilacqua A, Racioppo A, Campaniello D, Sinigaglia M, Corbo MR | Foods | 10.3390/foods10030661 | 2021 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
3817 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10140) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10140 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
41576 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17265 | ||||
53994 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 37979) | https://www.ccug.se/strain?id=37979 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
71380 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID11835.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120524 | Curators of the CIP | Collection of Institut Pasteur (CIP 105265) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105265 |