Strain identifier

BacDive ID: 17324

Type strain: Yes

Species: Vibrio mimicus

Strain Designation: 1721-77

Strain history: CIP <- 1985, ATCC <- D.J. Brenner, CDC: strain 1721-77 <- North Carolina State Brd. Hlth., USA

NCBI tax ID(s): 674 (species)

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General

@ref: 7928

BacDive-ID: 17324

DSM-Number: 19130

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Vibrio mimicus 1721-77 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from human ear infection.

NCBI tax id

  • NCBI tax id: 674
  • Matching level: species

strain history

@refhistory
7928<- CCM 4552 <- N. Frimodt-Moeller; <- CDC, Atlanta; CDC 1721-77 <- State Board of Health North Carolina;
120955CIP <- 1985, ATCC <- D.J. Brenner, CDC: strain 1721-77 <- North Carolina State Brd. Hlth., USA

doi: 10.13145/bacdive17324.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio mimicus
  • full scientific name: Vibrio mimicus Davis et al. 1982

@ref: 7928

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio mimicus

full scientific name: Vibrio mimicus Davis et al. 1982

strain designation: 1721-77

type strain: yes

Morphology

cell morphology

  • @ref: 120955
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

multimedia

  • @ref: 7928
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_19130.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7928BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
38804Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
7928COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
120955CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
7928positivegrowth28mesophilic
38804positivegrowth25mesophilic
45992positivegrowth30-37mesophilic
7928positivegrowth30mesophilic
120955positivegrowth15-41
120955nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
45992aerobe
120955facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
120955NaClpositivegrowth0-8 %
120955NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
68369malate+assimilation25115
68369adipate-assimilation17128
68369decanoate-assimilation27689
68369gluconate+assimilation24265
68369maltose+assimilation17306
68369N-acetylglucosamine+assimilation59640
68369D-mannitol+assimilation16899
68369D-mannose+assimilation16024
68369L-arabinose-assimilation30849
68369D-glucose+assimilation17634
68369gelatin+hydrolysis5291
68369esculin-hydrolysis4853
68369urea-hydrolysis16199
68369arginine-hydrolysis29016
68369D-glucose+fermentation17634
68369tryptophan+energy source27897
68369nitrate+reduction17632
68368L-arabinose-fermentation30849
68368amygdalin-fermentation27613
68368melibiose-fermentation28053
68368sucrose-fermentation17992
68368L-rhamnose-fermentation62345
68368sorbitol-fermentation30911
68368myo-inositol-fermentation17268
68368D-mannitol+fermentation16899
68368D-glucose+fermentation17634
68368gelatin+hydrolysis5291
68368tryptophan+energy source27897
68368urea-hydrolysis16199
68368citrate+assimilation16947
68368ornithine+degradation18257
68368lysine+degradation25094
68368arginine-hydrolysis29016
120955citrate+carbon source16947
120955esculin-hydrolysis4853
120955glucose+fermentation17234
120955lactose-fermentation17716
120955nitrate+reduction17632
120955nitrite-reduction16301
120955sodium thiosulfate+builds gas from132112
120955glucose+degradation17234
120955nitrate+respiration17632

antibiotic resistance

  • @ref: 120955
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleyes
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno
12095535581indoleyes

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole+
6836815688acetoin-
6836835581indole+
12095515688acetoin-
12095517234glucose+

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23
120955oxidase+
120955beta-galactosidase+3.2.1.23
120955alcohol dehydrogenase-1.1.1.1
120955gelatinase+
120955amylase+
120955DNase+
120955caseinase+3.4.21.50
120955catalase+1.11.1.6
120955tween esterase+
120955gamma-glutamyltransferase+2.3.2.2
120955lecithinase+
120955lipase+
120955lysine decarboxylase+4.1.1.18
120955ornithine decarboxylase+4.1.1.17
120955phenylalanine ammonia-lyase-4.3.1.24
120955protease+
120955tryptophan deaminase-
120955urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120955-+++-+----++-+-+-+--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
7928+-+++---+-+++-------+
7928+-+++---+-+++-------+
7928+-+++---+-+++-------+

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
7928+++---+++-+++++--++-+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120955+---+----++++----+---+-+++++---+--------------+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120955+++++----++-+--+-+-+-----------+-+--------------+++--++----++--------------+--+++-+---+--++++-+---+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
7928human ear infectionNorth CarolinaUSAUSANorth America35.7822-80.7935
45992Human ear infection,35-yr-old femaleNorth CarolinaUSAUSANorth America
120955Human, EarNorthern CaliforniaUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Organ#Ear
#Infection#Disease
#Infection#Patient
#Host#Human

taxonmaps

  • @ref: 69479
  • File name: preview.99_25.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_20;97_21;98_24;99_25&stattab=map
  • Last taxonomy: Vibrio cholerae
  • 16S sequence: X74713
  • Sequence Identity:
  • Total samples: 13905
  • soil counts: 252
  • aquatic counts: 4727
  • animal counts: 8651
  • plant counts: 275

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
79282Risk group (German classification)
1209552Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Vibrio mimicus RC5 16S-23S ribosomal RNA intergenic spacer region type 2AF114744509ena674
20218Vibrio mimicus RC5 16S-23S ribosomal RNA intergenic spacer region type 3AF114745424ena674
20218Vibrio mimicus RC5 16S-23S ribosomal RNA intergenic spacer region type 3AF114746430ena674
20218Vibrio mimicus RC5 16S-23S ribosomal RNA intergenic spacer region type 1AF114747670ena674
20218Vibrio mimicus 16S ribosomal RNA gene, partial sequenceAY292937415ena674
20218Vibrio mimicus strain ATCC 33653 16S ribosomal RNA gene, partial sequenceGU048836465ena674
7928V.mimicus (ATCC 33653T) gene for 16S ribosomal RNAX747131457ena674

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio mimicus NCTC11435GCA_900460385contigncbi674
66792Vibrio mimicus strain NCTC11435674.53wgspatric674
66792Vibrio mimicus NCTC 114352916739052draftimg674

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.849no
anaerobicno97.165no
halophileno59.289no
spore-formingno94.01no
glucose-utilyes89.16yes
thermophileno98.835yes
flagellatedyes92.792no
motileyes92.954no
aerobicyes83.733yes
glucose-fermentyes89.821yes

External links

@ref: 7928

culture collection no.: DSM 19130, ATCC 33653, CCM 4552, CCUG 13624, CDC 1721-77, LMG 7896, NCTC 11435, CIP 101888

straininfo link

  • @ref: 86324
  • straininfo: 5101

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny7037833Characterization of biochemically atypical Vibrio cholerae strains and designation of a new pathogenic species, Vibrio mimicus.Davis BR, Fanning GR, Madden JM, Steigerwalt AG, Bradford HB Jr, Smith HL Jr, Brenner DJJ Clin Microbiol10.1128/jcm.14.6.631-639.19811981Bacteriological Techniques, Base Sequence, DNA, Bacterial/analysis, *Genetic Variation, Microbial Sensitivity Tests, Serology, Species Specificity, Vibrio/*classification/genetics, Vibrio cholerae/*classification/genetics
Metabolism8013878Identification of the siderophores from Vibrio hollisae and Vibrio mimicus as aerobactin.Okujo N, Yamamoto SFEMS Microbiol Lett10.1111/j.1574-6968.1994.tb06824.x1994Bacterial Outer Membrane Proteins/metabolism, Culture Media, Ferric Compounds, Humans, Hydroxamic Acids/*chemistry/isolation & purification/metabolism, Magnetic Resonance Spectroscopy, Siderophores/*chemistry/isolation & purification/metabolism, Spectrometry, Mass, Fast Atom Bombardment, Vibrio/*chemistry/growth & developmentCultivation
Genetics9128176Nucleotide sequence of the vmhA gene encoding hemolysin from Vibrio mimicus.Kim GT, Lee JY, Huh SH, Yu JH, Kong ISBiochim Biophys Acta10.1016/s0925-4439(97)00008-21997Amino Acid Sequence, Bacterial Proteins/*genetics, Base Sequence, DNA, Bacterial/genetics, *Genes, Bacterial, Hemolysin Proteins/*genetics, Molecular Sequence Data, Sequence Alignment, Sequence Homology, Amino Acid, Species Specificity, Vibrio/*geneticsPhylogeny
Transcriptome9602021Isolation and sequence analysis of metalloprotease gene from Vibrio mimicus.Lee JH, Kim GT, Lee JY, Jun HK, Yu JH, Kong ISBiochim Biophys Acta10.1016/s0167-4838(97)00205-71998Amino Acid Sequence, Bacterial Proteins/*genetics, Base Sequence, Cloning, Molecular, *Genes, Bacterial, Metalloendopeptidases/*genetics, Molecular Sequence Data, Sequence Alignment, Sequence Analysis, Vibrio/*geneticsEnzymology
Enzymology9767128Cloning and identification of a phospholipase gene from vibrio mimicus.Kang JH, Lee JH, Park JH, Huh SH, Kong ISBiochim Biophys Acta10.1016/s0005-2760(98)00100-31998Amino Acid Sequence, Base Sequence, Cloning, Molecular, *Genes, Bacterial, Molecular Sequence Data, Phospholipases/chemistry/*genetics, Vibrio/*enzymology/geneticsGenetics
Pathogenicity10347079Response of pathogenic Vibrio species to high hydrostatic pressure.Berlin DL, Herson DS, Hicks DT, Hoover DGAppl Environ Microbiol10.1128/AEM.65.6.2776-2780.19991999Colony Count, Microbial, Disinfection/methods, Humans, *Hydrostatic Pressure, Vibrio/growth & development/isolation & purification/*physiology, Vibrio Infections/microbiologyEnzymology
Phylogeny18599703Vibrio porteresiae sp. nov., a diazotrophic bacterium isolated from a mangrove-associated wild rice (Porteresia coarctata Tateoka).Rameshkumar N, Fukui Y, Sawabe T, Nair SInt J Syst Evol Microbiol10.1099/ijs.0.65604-02008Molecular Sequence Data, *Nitrogen Fixation, Oryza/*microbiology, Oxidoreductases/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity, Verbenaceae, Vibrio/*classification/genetics/isolation & purificationGenetics
Genetics23516211Draft Genome Sequence of Vibrio mimicus Strain CAIM 602T.Guardiola-Avila I, Acedo-Felix E, Noriega-Orozco L, Yepiz-Plascencia G, Sifuentes-Romero I, Gomez-Gil BGenome Announc10.1128/genomeA.00084-132013

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7928Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19130)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19130
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38804Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/13513
45992Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 13624)https://www.ccug.se/strain?id=13624
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
68369Automatically annotated from API 20NE
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86324Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID5101.1StrainInfo: A central database for resolving microbial strain identifiers
120955Curators of the CIPCollection of Institut Pasteur (CIP 101888)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20101888