Strain identifier
BacDive ID: 1731
Type strain: 
Species: Bifidobacterium gallinarum subsp. saeculare
Strain Designation: RA159
Strain history: <- B. Biavati, RA159
NCBI tax ID(s): 78344 (subspecies)
version 8.1 (current version)
General
@ref: 2719
BacDive-ID: 1731
DSM-Number: 6533
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Bifidobacterium gallinarum subsp. saeculare RA159 is an anaerobe, mesophilic bacterium that was isolated from rabbit faeces.
NCBI tax id
- NCBI tax id: 78344
- Matching level: subspecies
strain history
- @ref: 2719
- history: <- B. Biavati, RA159
doi: 10.13145/bacdive1731.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium gallinarum subsp. saeculare
- full scientific name: Bifidobacterium gallinarum subsp. saeculare (Biavati et al. 1992) Liu et al. 2020
synonyms
@ref synonym 20215 Bifidobacterium saeculare 20215 Bifidobacterium pullorum subsp. saeculare
@ref: 2719
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium gallinarum subsp. saeculare
full scientific name: Bifidobacterium gallinarum subsp. saeculare (Biavati et al. 1992) Liu et al. 2020
strain designation: RA159
type strain: no
Culture and growth conditions
culture medium
- @ref: 2719
- name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
- growth: yes
- link: https://mediadive.dsmz.de/medium/58
- composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
culture temp
- @ref: 2719
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 2719
- oxygen tolerance: anaerobe
murein
- @ref: 2719
- murein short key: A11.32
- type: A4alpha L-Lys(L-Orn)-D-Asp
Isolation, sampling and environmental information
isolation
- @ref: 2719
- sample type: rabbit faeces
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Leporidae (Rabbit/Hare) |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_1595.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_39;97_1055;98_1260;99_1595&stattab=map
- Last taxonomy: Bifidobacterium pullorum subclade
- 16S sequence: D89330
- Sequence Identity:
- Total samples: 42299
- soil counts: 710
- aquatic counts: 1025
- animal counts: 40343
- plant counts: 221
Safety information
risk assessment
- @ref: 2719
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Bifidobacterium saeculare gene for 16S rRNA, partial sequence, strain: DSM 6533
- accession: D89330
- length: 1512
- database: ena
- NCBI tax ID: 78257
GC content
- @ref: 2719
- GC-content: 62.0
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 2719
culture collection no.: DSM 6533
straininfo link
- @ref: 71378
- straininfo: 48232
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2719 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6533) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6533 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 71378 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48232.1 | StrainInfo: A central database for resolving microbial strain identifiers |