Strain identifier

BacDive ID: 17281

Type strain: Yes

Species: Vibrio agarivorans

Strain Designation: 289A, 289

Strain history: CIP <- 2001, CECT <- 1996, MJ Pujalte: strain 289A

NCBI tax ID(s): 153622 (species)

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General

@ref: 5149

BacDive-ID: 17281

DSM-Number: 13756

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Vibrio agarivorans 289A is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 153622
  • Matching level: species

strain history

@refhistory
5149<- CECT <- M. J. Pujalte; 289A (Vibrio sp.)
67771<- DSM <- CECT <- M J Pujalte; 289A, `Vibrio` sp.
116154CIP <- 2001, CECT <- 1996, MJ Pujalte: strain 289A

doi: 10.13145/bacdive17281.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio agarivorans
  • full scientific name: Vibrio agarivorans Macián et al. 2001

@ref: 5149

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio agarivorans

full scientific name: Vibrio agarivorans Macián et al. 2001

strain designation: 289A, 289

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotility
67771negative
116154negativerod-shapedyes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5149BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33760Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
116154CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
5149positivegrowth28mesophilic
33760positivegrowth30mesophilic
58964positivegrowth30mesophilic
67771positivegrowth28mesophilic
116154positivegrowth22-37
116154nogrowth5psychrophilic
116154nogrowth15psychrophilic
116154nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
58964aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
116154NaClpositivegrowth2-4 %
116154NaClnogrowth0 %
116154NaClnogrowth6 %
116154NaClnogrowth8 %
116154NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11615416947citrate-carbon source
1161544853esculin-hydrolysis
11615417234glucose-fermentation
11615417716lactose-fermentation
11615417632nitrate+reduction
11615416301nitrite-reduction
116154132112sodium thiosulfate-builds gas from
11615417234glucose-degradation

metabolite production

  • @ref: 116154
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11615415688acetoin-
11615417234glucose-

enzymes

@refvalueactivityec
116154oxidase+
116154beta-galactosidase+3.2.1.23
116154alcohol dehydrogenase-1.1.1.1
116154gelatinase+/-
116154amylase+
116154caseinase+3.4.21.50
116154catalase+1.11.1.6
116154tween esterase-
116154gamma-glutamyltransferase-2.3.2.2
116154lecithinase+
116154lipase-
116154lysine decarboxylase-4.1.1.18
116154ornithine decarboxylase-4.1.1.17
116154phenylalanine ammonia-lyase-4.3.1.24
116154tryptophan deaminase-
116154urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116154-+++-++---++-+------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116154--------------------------------------------------------------+--+--------------------+------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
5149seawaterMediterranean Sea, ValenciaSpainESPEurope
58964SeawaterSpainESPEurope
67771From SeawaterMediterranean SeaSpainESPEurope
116154Environment, SeawaterSpainESPEurope1996

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
51491Risk group (German classification)
1161542Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Vibrio agarivorans 16S rRNA gene, strain 289T, CECT 5085T
  • accession: AJ310647
  • length: 1542
  • database: ena
  • NCBI tax ID: 153622

External links

@ref: 5149

culture collection no.: DSM 13756, CECT 5085, KCTC 12700, CCUG 50739, CIP 107301, KCTC 12947

straininfo link

  • @ref: 86281
  • straininfo: 87840

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11760944Vibrio agarivorans sp. nov., a novel agarolytic marine bacterium.Macian MC, Ludwig W, Schleifer KH, Pujalte MJ, Garay EInt J Syst Evol Microbiol10.1099/00207713-51-6-20312001Agar/*metabolism, DNA, Ribosomal/genetics, Mediterranean Sea, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vibrio/*classification/*genetics/isolation & purification/metabolismMetabolism
Phylogeny19605706Vibrio hangzhouensis sp. nov., isolated from sediment of the East China Sea.Xu XW, Wu YH, Wang CS, Oren A, Wu MInt J Syst Evol Microbiol10.1099/ijs.0.008698-02009Aerobiosis, Bacterial Typing Techniques, Base Composition, Catalase/metabolism, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Locomotion, Microscopy, Electron, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vibrio/*classification/genetics/*isolation & purification/physiologyMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5149Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13756)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13756
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33760Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4721
58964Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 50739)https://www.ccug.se/strain?id=50739
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68382Automatically annotated from API zym
86281Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID87840.1StrainInfo: A central database for resolving microbial strain identifiers
116154Curators of the CIPCollection of Institut Pasteur (CIP 107301)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107301