Strain identifier

BacDive ID: 17279

Type strain: Yes

Species: Listonella anguillarum

Strain history: CIP <- 1963, NCIB <- 1958, J.M. Shewan <- J. Bagge, Vibrio anguillarum

NCBI tax ID(s): 1223500 (strain), 55601 (species)

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General

@ref: 15835

BacDive-ID: 17279

DSM-Number: 21597

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped, animal pathogen

description: Listonella anguillarum DSM 21597 is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from Ulcerated cod .

NCBI tax id

NCBI tax idMatching level
55601species
1223500strain

strain history

@refhistory
15835<- NCIMB <- J. Bagge, Fra Sundhedskommissionens Laboratorium <- J. Bagge and O. Bagge
67770LMG 4437 <-- R. Colwell; Univ. of Maryland, USA <-- ATCC 19264 <-- NCMB 6 <-- J. Shewan <-- J. Bagge.
116386CIP <- 1963, NCIB <- 1958, J.M. Shewan <- J. Bagge, Vibrio anguillarum

doi: 10.13145/bacdive17279.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Listonella
  • species: Listonella anguillarum
  • full scientific name: Listonella anguillarum corrig. (Bergman 1909) MacDonell and Colwell 1986

  • synonyms

    @refsynonym
    20215Listonella anguillara
    20215Vibrio anguillarum

@ref: 15835

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Listonella

species: Listonella anguillarum

full scientific name: Listonella anguillarum (Bergeman 1909) MacDonell and Colwell 1986

type strain: yes

Morphology

cell morphology

  • @ref: 116386
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 57610
  • incubation period: 2 days

multimedia

  • @ref: 15835
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_21597.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15835COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
15835TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
15835BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37701MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
116386CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13
116386CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
15835positivegrowth30mesophilic
15835positivegrowth28mesophilic
37701positivegrowth25mesophilic
57610positivegrowth20-30
67770positivegrowth25mesophilic
116386positivegrowth5-37
116386nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
57610aerobe
116386facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
116386NaClpositivegrowth0-8 %
116386NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
68368L-arabinose-fermentation30849
68368melibiose-fermentation28053
68368L-rhamnose-fermentation62345
68368myo-inositol-fermentation17268
68368gelatin+hydrolysis5291
68368urea-hydrolysis16199
68368ornithine-degradation18257
68368lysine-degradation25094
116386citrate+carbon source16947
116386esculin-hydrolysis4853
116386glucose+fermentation17234
116386lactose-fermentation17716
116386nitrate+reduction17632
116386nitrite-reduction16301
116386sodium thiosulfate-builds gas from132112
116386glucose+degradation17234
116386nitrate+respiration17632

antibiotic resistance

  • @ref: 116386
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836816136hydrogen sulfideno
11638635581indoleyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
6836815688acetoin+
11638615688acetoin+
11638617234glucose-

enzymes

@refvalueactivityec
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
116386oxidase+
116386beta-galactosidase+3.2.1.23
116386alcohol dehydrogenase+1.1.1.1
116386gelatinase+
116386amylase+
116386DNase+
116386caseinase+3.4.21.50
116386catalase+1.11.1.6
116386tween esterase+
116386gamma-glutamyltransferase+2.3.2.2
116386lecithinase+
116386lipase+
116386lysine decarboxylase-4.1.1.18
116386ornithine decarboxylase-4.1.1.17
116386phenylalanine ammonia-lyase-4.3.1.24
116386protease+
116386tryptophan deaminase-
116386urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57610C12:02.512
    57610C14:0514
    57610C15:00.415
    57610C16:025.916
    57610C17:00.417
    57610C18:0118
    57610C12:0 3OH1.313.455
    57610C13:0 ISO 2OH1.213.814
    57610C14:0 3OH/C16:1 ISO I1.315.485
    57610C14:0 ISO0.513.618
    57610C16:0 iso4.415.626
    57610C16:1 ω7c37.915.819
    57610C16:1 ω9c0.615.774
    57610C17:1 ω8c0.416.792
    57610C18:0 ISO0.417.632
    57610C18:1 ω7c /12t/9t13.717.824
    57610C18:1 ω9c0.417.769
    57610C18:2 ω6,9c/C18:0 ANTE117.724
    57610Unidentified0.310.912
    57610Unidentified0.815.274
    57610Unidentified0.218.08
    57610unknown 12.4860.712.486
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116386+++++++---++-+-+-+--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
15835---------++---------+
15835++--+---+++++-+-+-+-+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116386+--++----++++----++--+-+/-+/-+/-++--++---++---------++/--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116386+++++--+-++----+-+-++----------+-+--+------------+---+-----++--------------+--+++-+---+--++++++--+-

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
15835Ulcerated cod (Gadus morhua)Gadus morhuaNorwegian fjordsNorwayNOREurope
57610Fish,ulcerous lesion in cod
116386Animal, Ulcerated cod, Gadus morhuaNorwegian fjordsNorwayNOREurope

isolation source categories

Cat1Cat2
#Infection#Inflammation
#Host#Fishes

taxonmaps

  • @ref: 69479
  • File name: preview.99_2159.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_361;98_1685;99_2159&stattab=map
  • Last taxonomy: Vibrio anguillarum
  • 16S sequence: X16895
  • Sequence Identity:
  • Total samples: 216
  • soil counts: 5
  • aquatic counts: 148
  • animal counts: 63

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
15835yes2Risk group (German classification)
1163862Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Listonella anguillarum gene for 16S rRNA, partial sequence, strain: NBRC 13266AB6803891470ena55601
20218Listonella anguillarum 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer region, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequenceAY227665598ena55601
20218Listonella anguillarum strain ATCC 19264 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequenceEU570970598ena55601
20218Listonella anguillarum strain ATCC 19264 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer and tRNA-Glu gene, complete sequence; and 23S ribosomal RNA gene, partial sequenceEU570971510ena55601
20218Vibrio anguillarum strain CECT522 16S ribosomal RNA gene, partial sequenceEU851049500ena55601
20218Listonella anguillarum strain ATCC 19264 16S-23S ribosomal RNA intergenic spacer, partial sequence; and tRNA-Glu, tRNA-Lys, and tRNA-Val genes, complete sequenceFJ666331724ena55601
20218Listonella anguillarum strain ATCC 19264 16S-23S ribosomal RNA intergenic spacer, partial sequence; and tRNA-Glu, tRNA-Lys, tRNA-Ala, and tRNA-Val genes, complete sequenceFJ666332821ena55601
20218Vibrio anguilarum ATCC 19264 (strain 507, serotype 02) 16S ribosomal RNA (16S rRNA)M2838599ena105260
15835Vibrio anguillarum partial 16S rRNA gene, type strain ATCC 19264TX168951505ena55601
15835Listonella anguillarum partial 16S rRNA gene, strain NCMB 6AM2357371455ena55601

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio anguillarum DSM 21597GCA_001989995contigncbi55601
66792Vibrio anguillarum strain DSM 2159755601.109completepatric55601
66792Vibrio anguillarum strain NCTC1215955601.211wgspatric55601
66792Vibrio anguillarum NCTC 121592916734906draftimg55601
67770Vibrio anguillarum NCTC12159GCA_900452855contigncbi55601

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.874no
anaerobicno96.85no
halophileyes56.57no
spore-formingno95.972no
glucose-utilyes90.844no
thermophileno98.866yes
aerobicyes84.198yes
motileyes91.03no
flagellatedyes88.338no
glucose-fermentyes88.546no

External links

@ref: 15835

culture collection no.: DSM 21597, ATCC 19264, CAIM 696, CCTM 2283, CCUG 47265, CECT 522, CIP 63.36, IFO 13266, LMG 4410, LMG 4437, NBRC 13266, NCCB 72050, NCIMB 6, NCTC 12159, RIMD 2202001, JCM 33359

straininfo link

  • @ref: 86279
  • straininfo: 3535

literature

Pubmed-IDtitleauthorsjournalyearmeshtopicDOItopic2
8065273A microbiological assay for determining sarafloxacin and oxolinic acid concentrations in Atlantic salmon plasma.Giles JS, Hariharan H, Heaney SBNew Microbiol1994Animals, *Anti-Infective Agents, Bacillus subtilis, *Biological Assay, Ciprofloxacin/*analogs & derivatives/blood, Escherichia coli, *Fluoroquinolones, Oxolinic Acid/*blood, Salmon, Vibrio
20493193Specificity of anti-Vibrio immune response through p38 MAPK and PKC activation in the hemocytes of the mussel Mytilus galloprovincialis.Ciacci C, Betti M, Canonico B, Citterio B, Roch P, Canesi LJ Invertebr Pathol2010Animals, Cell Adhesion/physiology, Hemocytes/cytology/*metabolism, Muramidase/metabolism, Mytilus/*immunology/metabolism/*microbiology, Nitric Oxide/metabolism, Phosphorylation/physiology, Protein Kinase C/*metabolism, Reactive Oxygen Species/metabolism, Signal Transduction/physiology, Species Specificity, Vibrio/*classification/pathogenicity, p38 Mitogen-Activated Protein Kinases/*metabolismMetabolism10.1016/j.jip.2010.05.010Phylogeny
20601119Effects of vibrio challenge on digestive gland biomarkers and antioxidant gene expression in Mytilus galloprovincialis.Canesi L, Barmo C, Fabbri R, Ciacci C, Vergani L, Roch P, Gallo GComp Biochem Physiol C Toxicol Pharmacol2010Animals, Antioxidants/*metabolism, Catalase/metabolism, Digestive System/enzymology/metabolism/parasitology, *Gene Expression, Glutathione Transferase/metabolism, Mytilus/genetics/*metabolism/parasitology, Vibrio/*pathogenicityMetabolism10.1016/j.cbpc.2010.06.008Enzymology
21296930The genus Listonella MacDonell and Colwell 1986 is a later heterotypic synonym of the genus Vibrio Pacini 1854 (Approved Lists 1980)--a taxonomic opinion.Thompson FL, Thompson CC, Dias GM, Naka H, Dubay C, Crosa JHInt J Syst Evol Microbiol2011Bacterial Typing Techniques, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Listonella/*classification/genetics/*isolation & purification, Molecular Sequence Data, Multilocus Sequence Typing, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Vibrio/*classification/genetics/*isolation & purificationPhylogeny10.1099/ijs.0.030015-0Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15835Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21597)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21597
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37701Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10044
57610Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 47265)https://www.ccug.se/strain?id=47265
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86279Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3535.1StrainInfo: A central database for resolving microbial strain identifiers
116386Curators of the CIPCollection of Institut Pasteur (CIP 63.36)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2063.36