Strain identifier

BacDive ID: 17274

Type strain: Yes

Species: Vibrio sinaloensis

Strain history: <- B. Gomez-Gil, Collection of Aquatic Important Microorgansms, Sinaloa

NCBI tax ID(s): 379097 (species)

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General

@ref: 15620

BacDive-ID: 17274

DSM-Number: 21333

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Vibrio sinaloensis DSM 21333 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from spleen of spotted nose snapper .

NCBI tax id

  • NCBI tax id: 379097
  • Matching level: species

strain history

  • @ref: 15620
  • history: <- B. Gomez-Gil, Collection of Aquatic Important Microorgansms, Sinaloa

doi: 10.13145/bacdive17274.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio sinaloensis
  • full scientific name: Vibrio sinaloensis Gomez-Gil et al. 2008

@ref: 15620

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio sinaloensis

full scientific name: Vibrio sinaloensis Gomez-Gil et al. 2008

type strain: yes

Morphology

cell morphology

  • @ref: 32576
  • gram stain: negative
  • cell shape: rod-shaped

pigmentation

  • @ref: 32576
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 15620
  • name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514c
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperature
15620positivegrowth30
32576positivegrowth15-40
32576positiveoptimum37

culture pH

@refabilitytypepH
32576positivegrowth7
32576positiveoptimum7

Physiology and metabolism

spore formation

  • @ref: 32576
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
32576NaClpositivegrowth0.35-9 %
32576NaClpositiveoptimum0.35-9 %

observation

  • @ref: 32576
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
32576370543-hydroxybutyrate+carbon source
3257616449alanine+carbon source
3257629016arginine+carbon source
3257617057cellobiose+carbon source
3257616947citrate+carbon source
3257628757fructose+carbon source
3257624265gluconate+carbon source
3257617234glucose+carbon source
3257629987glutamate+carbon source
3257615428glycine+carbon source
3257624996lactate+carbon source
3257625115malate+carbon source
3257617306maltose+carbon source
3257637684mannose+carbon source
32576506227N-acetylglucosamine+carbon source
3257617272propionate+carbon source
3257615361pyruvate+carbon source
3257633942ribose+carbon source
3257617822serine+carbon source
3257630031succinate+carbon source
3257617992sucrose+carbon source
3257626986threonine+carbon source
3257627082trehalose+carbon source
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan+energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68369gelatinase+
68369urease-3.5.1.5
68369cytochrome oxidase+1.9.3.1
68369beta-glucosidase-3.2.1.21
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
15620+++---+-------------+

Isolation, sampling and environmental information

isolation

  • @ref: 15620
  • sample type: spleen of spotted nose snapper (Lutjanus guttatus)
  • host species: Lutjanus guttatus
  • geographic location: Sinaloa
  • country: Mexico
  • origin.country: MEX
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Fishes
#Host Body-Site#Organ#Spleen

Safety information

risk assessment

  • @ref: 15620
  • pathogenicity animal: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
15620Vibrio sinaloensis strain CAIM 797 16S ribosomal RNA gene, partial sequenceDQ4512111488nuccore379097
124043Vibrio sinaloensis strain CAIM 797(T) 16S ribosomal RNA gene, partial sequence.OQ147520499nuccore379097

External links

@ref: 15620

culture collection no.: DSM 21333, CAIM 797, CECT 7298

straininfo link

  • @ref: 86273
  • straininfo: 293725

literature

  • topic: Phylogeny
  • Pubmed-ID: 18599705
  • title: Vibrio sinaloensis sp. nov., isolated from the spotted rose snapper, Lutjanus guttatus Steindachner, 1869.
  • authors: Gomez-Gil B, Fajer-Avila E, Pascual J, Macian MC, Pujalte MJ, Garay E, Roque A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65719-0
  • year: 2008
  • mesh: Animals, Fish Diseases/*microbiology, Mexico, Molecular Sequence Data, Nucleic Acid Hybridization, Perciformes/*microbiology, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species Specificity, Vibrio/*classification/genetics/*isolation & purification, Vibrio Infections/microbiology/*veterinary
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15620Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21333)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21333
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32576Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2879128776041
68369Automatically annotated from API 20NE
86273Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID293725.1StrainInfo: A central database for resolving microbial strain identifiers
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy