Strain identifier
BacDive ID: 17261
Type strain:
Species: Vibrio owensii
Strain Designation: 74
Strain history: <- CCM <- P. Baumann; 74 (Beneckea neptuna)
NCBI tax ID(s): 1280000 (strain), 696485 (species)
General
@ref: 989
BacDive-ID: 17261
DSM-Number: 2165
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile, animal pathogen
description: Vibrio owensii 74 is a mesophilic, motile animal pathogen that was isolated from seawater enriched with glycerol and nitrate.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1280000 | strain |
696485 | species |
strain history
- @ref: 989
- history: <- CCM <- P. Baumann; 74 (Beneckea neptuna)
doi: 10.13145/bacdive17261.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio owensii
- full scientific name: Vibrio owensii Cano-Gómez et al. 2010
synonyms
- @ref: 20215
- synonym: Vibrio communis
@ref: 989
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales, not validated
family: Vibrionaceae
genus: Vibrio
species: Vibrio owensii
full scientific name: Vibrio owensii Cano-Gómez et al. 2010
strain designation: 74
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 96.684 | |
69480 | 99.966 | negative |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
989 | SEA WATER AGAR (DSMZ Medium 246) | yes | https://mediadive.dsmz.de/medium/246 | Name: SEA WATER AGAR (DSMZ Medium 246) Composition: Agar 20.0 g/l Peptone 10.0 g/l Beef extract 10.0 g/l Tap water Sea water |
989 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
culture temp
- @ref: 989
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.812 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | + | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | + | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | + | hydrolysis |
68369 | 4853 | esculin | + | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 27897 | tryptophan | + | energy source |
68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | + | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
989 | + | + | + | - | - | + | + | + | + | - | + | + | +/- | + | + | - | - | + | + | - | + |
989 | + | + | - | - | - | + | + | + | + | - | + | + | + | + | + | - | - | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 989
- sample type: seawater enriched with glycerol and nitrate
- geographic location: Hawaii
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Laboratory | #Lab enrichment |
#Environmental | #Aquatic | #Marine |
taxonmaps
- @ref: 69479
- File name: preview.99_1344.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_74;98_81;99_1344&stattab=map
- Last taxonomy: Vibrio
- 16S sequence: EU130473
- Sequence Identity:
- Total samples: 345
- soil counts: 4
- aquatic counts: 169
- animal counts: 159
- plant counts: 13
Safety information
risk assessment
- @ref: 989
- pathogenicity animal: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Vibrio harveyi ATCC:25919 16S ribosomal RNA gene, partial sequence
- accession: EU130473
- length: 1475
- database: ena
- NCBI tax ID: 669
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Vibrio owensii ATCC 25919 | GCA_000400225 | scaffold | ncbi | 1280000 |
66792 | Vibrio owensii ATCC 25919 | 1280000.3 | wgs | patric | 1280000 |
66792 | Vibrio harveyi ATCC 25919 | 2582580862 | draft | img | 1280000 |
GC content
@ref | GC-content | method |
---|---|---|
989 | 46.44 | sequence analysis |
989 | 46.4 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 91.594 | no |
flagellated | yes | 88.671 | no |
gram-positive | no | 98.557 | no |
anaerobic | no | 97.192 | no |
aerobic | yes | 86.178 | no |
halophile | yes | 50.941 | no |
spore-forming | no | 92.938 | no |
thermophile | no | 99.425 | no |
glucose-util | yes | 90.077 | yes |
glucose-ferment | yes | 88.657 | no |
External links
@ref: 989
culture collection no.: DSM 2165, ATCC 25919, CCM 2580
straininfo link
- @ref: 86260
- straininfo: 265513
literature
- topic: Genetics
- Pubmed-ID: 23710045
- title: Taxonomic revision of Harveyi clade bacteria (family Vibrionaceae) based on analysis of whole genome sequences.
- authors: Urbanczyk H, Ogura Y, Hayashi T
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.051110-0
- year: 2013
- mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, *Genome, Bacterial, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vibrio/*classification/genetics
- topic2: Phylogeny
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
989 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2165) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2165 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68369 | Automatically annotated from API 20NE | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
86260 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID265513.1 | StrainInfo: A central database for resolving microbial strain identifiers |