Strain identifier

BacDive ID: 17261

Type strain: No

Species: Vibrio owensii

Strain Designation: 74

Strain history: <- CCM <- P. Baumann; 74 (Beneckea neptuna)

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General

@ref: 989

BacDive-ID: 17261

DSM-Number: 2165

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile, animal pathogen

description: Vibrio owensii 74 is a mesophilic, motile animal pathogen that was isolated from seawater enriched with glycerol and nitrate.

NCBI tax id

NCBI tax idMatching level
1280000strain
696485species

strain history

  • @ref: 989
  • history: <- CCM <- P. Baumann; 74 (Beneckea neptuna)

doi: 10.13145/bacdive17261.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio owensii
  • full scientific name: Vibrio owensii Cano-Gómez et al. 2010
  • synonyms

    • @ref: 20215
    • synonym: Vibrio communis

@ref: 989

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio owensii

full scientific name: Vibrio owensii Cano-Gómez et al. 2010

strain designation: 74

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes96.684
6948099.966negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
989SEA WATER AGAR (DSMZ Medium 246)yeshttps://mediadive.dsmz.de/medium/246Name: SEA WATER AGAR (DSMZ Medium 246) Composition: Agar 20.0 g/l Peptone 10.0 g/l Beef extract 10.0 g/l Tap water Sea water
989BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 989
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.812

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836927897tryptophan+energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
989+++--++++-+++/-++--++-+
989++---++++-+++++--++-+

Isolation, sampling and environmental information

isolation

  • @ref: 989
  • sample type: seawater enriched with glycerol and nitrate
  • geographic location: Hawaii
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Laboratory#Lab enrichment
#Environmental#Aquatic#Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_1344.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_74;98_81;99_1344&stattab=map
  • Last taxonomy: Vibrio
  • 16S sequence: EU130473
  • Sequence Identity:
  • Total samples: 345
  • soil counts: 4
  • aquatic counts: 169
  • animal counts: 159
  • plant counts: 13

Safety information

risk assessment

  • @ref: 989
  • pathogenicity animal: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Vibrio harveyi ATCC:25919 16S ribosomal RNA gene, partial sequence
  • accession: EU130473
  • length: 1475
  • database: ena
  • NCBI tax ID: 669

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio owensii ATCC 25919GCA_000400225scaffoldncbi1280000
66792Vibrio owensii ATCC 259191280000.3wgspatric1280000
66792Vibrio harveyi ATCC 259192582580862draftimg1280000

GC content

@refGC-contentmethod
98946.44sequence analysis
98946.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes91.594no
flagellatedyes88.671no
gram-positiveno98.557no
anaerobicno97.192no
aerobicyes86.178no
halophileyes50.941no
spore-formingno92.938no
thermophileno99.425no
glucose-utilyes90.077yes
glucose-fermentyes88.657no

External links

@ref: 989

culture collection no.: DSM 2165, ATCC 25919, CCM 2580

straininfo link

  • @ref: 86260
  • straininfo: 265513

literature

  • topic: Genetics
  • Pubmed-ID: 23710045
  • title: Taxonomic revision of Harveyi clade bacteria (family Vibrionaceae) based on analysis of whole genome sequences.
  • authors: Urbanczyk H, Ogura Y, Hayashi T
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.051110-0
  • year: 2013
  • mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, *Genome, Bacterial, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vibrio/*classification/genetics
  • topic2: Phylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
989Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2165)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2165
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86260Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID265513.1StrainInfo: A central database for resolving microbial strain identifiers