Strain identifier

BacDive ID: 17248

Type strain: Yes

Species: Aliivibrio fischeri

Strain Designation: 398

Strain history: CIP <- 1988, NCIB <- 1965, ATCC <- F.J. Johnson, Achromobacter fischeri

NCBI tax ID(s): 1298605 (strain), 668 (species)

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General

@ref: 254

BacDive-ID: 17248

DSM-Number: 507

keywords: genome sequence, 16S sequence, Bacteria, aerobe, psychrophilic, motile

description: Aliivibrio fischeri 398 is an aerobe, psychrophilic, motile bacterium of the family Vibrionaceae.

NCBI tax id

NCBI tax idMatching level
1298605strain
668species

strain history

@refhistory
254<- ATCC <- F.H. Johnson (Achromobacter fischeri)
67770DSM 507 <-- ATCC 7744 <-- F. H. Johnson.
119358CIP <- 1988, NCIB <- 1965, ATCC <- F.J. Johnson, Achromobacter fischeri

doi: 10.13145/bacdive17248.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Aliivibrio
  • species: Aliivibrio fischeri
  • full scientific name: Aliivibrio fischeri (Beijerinck 1889) Urbanczyk et al. 2007

  • synonyms

    @refsynonym
    20215Vibrio fischeri
    20215Photobacterium fischeri

@ref: 254

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Aliivibrio

species: Aliivibrio fischeri

full scientific name: Aliivibrio fischeri (Beijerinck 1889) Urbanczyk et al. 2007

strain designation: 398

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes93.888
6948099.978negative
119358yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
254REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)yeshttps://mediadive.dsmz.de/medium/514cName: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
41758Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
119358CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
254positivegrowth22psychrophilic
41758positivegrowth25mesophilic
45953positivegrowth26mesophilic
67770positivegrowth22psychrophilic
119358positivegrowth15-30
119358nogrowth5psychrophilic
119358nogrowth37mesophilic
119358nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
45953aerobe
119358facultative anaerobe

spore formation

@refspore formationconfidence
69481no94
69480no99.748

compound production

  • @ref: 254
  • compound: luciferase

halophily

@refsaltgrowthtested relationconcentration
119358NaClpositivegrowth2-6 %
119358NaClnogrowth0 %
119358NaClnogrowth8 %
119358NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
6836817632nitrate+reduction
6836830849L-arabinose-fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis
11935816947citrate-carbon source
1193584853esculin-hydrolysis
11935817234glucose-fermentation
11935817716lactose+fermentation
11935817632nitrate+reduction
11935816301nitrite-reduction
119358132112sodium thiosulfate-builds gas from
11935817234glucose-degradation
11935817632nitrate+respiration

antibiotic resistance

  • @ref: 119358
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
6836817997dinitrogenno
6836816301nitriteyes
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno
11935835581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
6836815688acetoin-
6836835581indole-
11935815688acetoin-
11935817234glucose-

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6
68368cytochrome oxidase+1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
119358oxidase+
119358beta-galactosidase-3.2.1.23
119358alcohol dehydrogenase-1.1.1.1
119358gelatinase-
119358amylase-
119358DNase-
119358caseinase-3.4.21.50
119358catalase+1.11.1.6
119358tween esterase-
119358gamma-glutamyltransferase-2.3.2.2
119358lecithinase-
119358lipase+
119358lysine decarboxylase-4.1.1.18
119358ornithine decarboxylase-4.1.1.17
119358phenylalanine ammonia-lyase-4.3.1.24
119358protease+
119358tryptophan deaminase-
119358urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119358-+++-+----++--------

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
254--+---+----++-----+-++-
254--+---+----++-----+-+
254--+---+----++-----+-++-
254--+---+----++-----+-+
254--+---+----++-----+-+

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
254+-+-++-+------------+
254+-+-++-+------------+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119358+++-+----+-----+++++-----------+-+---------------+---------+-------------------++-+---+--+++-------

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
2541Risk group (German classification)
1193582Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Vibrio fischeri isolate 7744 16S ribosomal RNA gene, partial sequenceAY2929381227ena668
20218Vibrio fischeri strain ATCC 7744 16S ribosomal RNA gene, partial sequenceAY3414361475ena668
20218Vibrio fischeri 16S rRNAD11202159ena668
20218Vibrio fischeri 16S rRNAD11251205ena668
20218Vibrio fischeri 16S rRNAD11300193ena668
20218V.fisheri (ATCC 7744T) gene for 16S ribosomal RNAX747021467ena668
20218V.fischeri gamma subclass (NCMB 1281) gene for 16S rRNAX706401486ena668

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507GCA_016464335scaffoldncbi1298605
66792Aliivibrio fischeri JCM 18803GCA_014647395scaffoldncbi668
66792Aliivibrio fischeri JCM 188031298605.61wgspatric1298605
66792Aliivibrio fischeri strain ATCC 7744668.164wgspatric668
66792Aliivibrio fischeri strain JCM 18803668.149wgspatric668
66792Aliivibrio fischeri JCM 188032734481910draftimg1298605
67770Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507GCA_001312625contigncbi1298605
66792Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507GCA_023983475completencbi1298605

GC content

@refGC-contentmethod
25439.7
6777039.7thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno94no
flagellatedyes84.57no
gram-positiveno98.738no
anaerobicno96.282no
aerobicyes76.019no
halophileyes66.241no
spore-formingno93.567no
motileyes90.132no
glucose-fermentyes85.045no
thermophileno99.247yes
glucose-utilyes85.888no

External links

@ref: 254

culture collection no.: DSM 507, ATCC 7744, JCM 18803, NCMB 1281, CCUG 13450, CAIM 329, LMG 4414, CIP 103206, NCCB 80039, BCRC 12900, CCUG 16305, CECT 524, CIP 75.08, CIP 75.8, KCTC 12272, KCTC 12386, NCIMB 1281, NRRL B-41164, NRRL B-761

straininfo link

  • @ref: 86246
  • straininfo: 13867

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology1624432Physical and functional maps of the luminescence gene cluster in an autoinducer-deficient Vibrio fischeri strain isolated from a squid light organ.Gray KM, Greenberg EPJ Bacteriol10.1128/jb.174.13.4384-4390.199219924-Butyrolactone/*analogs & derivatives/metabolism/pharmacology, Animals, Base Sequence, Chromosomes, Bacterial, Cloning, Molecular, DNA, Bacterial/genetics/isolation & purification, Decapodiformes/microbiology, Escherichia coli/genetics/growth & development/physiology, *Genes, Bacterial/drug effects, Luminescent Measurements, Molecular Sequence Data, *Multigene Family/drug effects, Oligonucleotide Probes, Plasmids, Restriction Mapping, Vibrio/*genetics/isolation & purification/physiologyPhylogeny
Genetics2141835Use of regulated cell lysis in a lethal genetic selection in Escherichia coli: identification of the autoinducer-binding region of the LuxR protein from Vibrio fischeri ATCC 7744.Shadel GS, Young R, Baldwin TOJ Bacteriol10.1128/jb.172.7.3980-3987.19901990Amino Acid Sequence, Bacterial Proteins/*genetics, Bacteriophage lambda/genetics, Base Sequence, Binding Sites, Escherichia coli/drug effects/*genetics/growth & development, *Genes, Lethal, Hydroxylamine, Hydroxylamines/pharmacology, Luminescent Measurements, Molecular Sequence Data, Mutation, *Repressor Proteins, Restriction Mapping, *Trans-Activators, Vibrio/*geneticsPathogenicity
Enzymology2742584Interaction between luciferases from various species of bioluminescent bacteria and the yellow fluorescent protein of Vibrio fischeri strain Y-1.Daubner SC, Baldwin TOBiochem Biophys Res Commun10.1016/0006-291x(89)91368-51989Bacterial Proteins/isolation & purification/*metabolism, Kinetics, Luciferases/*metabolism, Luminescent Measurements, Luminescent Proteins/isolation & purification/*metabolism, Photobacterium/*enzymology, Species Specificity, Vibrio/*enzymology/metabolismPhylogeny
Genetics2762291Identification of the operator of the lux regulon from the Vibrio fischeri strain ATCC7744.Devine JH, Shadel GS, Baldwin TOProc Natl Acad Sci U S A10.1073/pnas.86.15.56881989Amino Acid Sequence, Base Sequence, *Genes, Bacterial, *Genes, Regulator, Molecular Sequence Data, Mutation, *Operon, Plasmids, Vibrio/*genetics
Genetics2801220The complete nucleotide sequence of the lux regulon of Vibrio fischeri and the luxABN region of Photobacterium leiognathi and the mechanism of control of bacterial bioluminescence.Baldwin TO, Devine JH, Heckel RC, Lin JW, Shadel GSJ Biolumin Chemilumin10.1002/bio.11700401451989Amino Acid Sequence, Bacterial Proteins/genetics, Base Sequence, DNA, Bacterial/genetics, Luciferases/genetics, *Luminescent Measurements, Molecular Sequence Data, Mutation, Operator Regions, Genetic, Photobacterium/*genetics/metabolism, Regulatory Sequences, Nucleic Acid, Repetitive Sequences, Nucleic Acid, Vibrio/*genetics/metabolismMetabolism
Enzymology2993237Functional identification of the fatty acid reductase components encoded in the luminescence operon of Vibrio fischeri.Boylan M, Graham AF, Meighen EAJ Bacteriol10.1128/jb.163.3.1186-1190.19851985Acylation, Bacterial Proteins/isolation & purification, DNA Restriction Enzymes, Fatty Acid Desaturases/*genetics/metabolism, Genes, Genes, Bacterial, Kinetics, Luminescent Measurements, Molecular Weight, *Operon, Vibrio/enzymology/*geneticsPhylogeny
Enzymology7999036Stereospecificity of hydride transfer and substrate specificity for FMN-containing NAD(P)H-flavin oxidoreductase from the luminescent bacterium, Vibrio fischeri ATCC 7744.Inouye S, Nakamura HBiochem Biophys Res Commun10.1006/bbrc.1994.26611994FMN Reductase, Hydrogen/*metabolism, NAD/chemistry, NADH, NADPH Oxidoreductases/chemistry/*metabolism, Substrate Specificity, Vibrio/*enzymologyMetabolism
Enzymology8033996NAD(P)H-flavin oxidoreductase from the bioluminescent bacterium, Vibrio fischeri ATCC 7744, is a flavoprotein.Inouye SFEBS Lett10.1016/0014-5793(94)00528-11994Amino Acid Sequence, Chromatography, Affinity, Electron Transport, Electrophoresis, Polyacrylamide Gel, Enzyme Stability, Escherichia coli, FMN Reductase, Flavin Mononucleotide/analysis/chemistry/metabolism, Hot Temperature, Hydrogen Peroxide/metabolism, Hydrogen-Ion Concentration, Luminescence, Molecular Sequence Data, Molecular Weight, NAD/metabolism, NADH, NADPH Oxidoreductases/chemistry/genetics/*metabolism, Recombinant Proteins, Spectrophotometry, Vibrio/*enzymologyMetabolism
Enzymology8206830Identification of the gene encoding the major NAD(P)H-flavin oxidoreductase of the bioluminescent bacterium Vibrio fischeri ATCC 7744.Zenno S, Saigo K, Kanoh H, Inouye SJ Bacteriol10.1128/jb.176.12.3536-3543.19941994Amino Acid Sequence, Base Sequence, Cloning, Molecular, Enterobacteriaceae/enzymology, Escherichia coli/genetics, FMN Reductase, Genes, Bacterial/*genetics, *Luminescent Measurements, Molecular Sequence Data, NADH, NADPH Oxidoreductases/biosynthesis/*genetics, Nitroreductases/genetics/metabolism, Oxygen/metabolism, Recombinant Proteins/biosynthesis, Sequence Analysis, Sequence Homology, Amino Acid, Vibrio/enzymology/*geneticsGenetics
Enzymology8206831Identification of the genes encoding NAD(P)H-flavin oxidoreductases that are similar in sequence to Escherichia coli Fre in four species of luminous bacteria: Photorhabdus luminescens, Vibrio fischeri, Vibrio harveyi, and Vibrio orientalis.Zenno S, Saigo KJ Bacteriol10.1128/jb.176.12.3544-3551.19941994Amino Acid Sequence, Bacteria/enzymology/*genetics, Bacterial Proteins/genetics/metabolism, Base Sequence, FMN Reductase, Genes, Bacterial/*genetics, Genomic Library, *Luminescent Measurements, Molecular Sequence Data, NADH, NADPH Oxidoreductases/*genetics, NADP/metabolism, Oxidation-Reduction, *Oxidoreductases, Riboflavin/metabolism, Sequence Homology, Species Specificity, Vibrio/enzymology/*geneticsMetabolism
Enzymology8447834Nucleotide sequence of the luxC gene encoding fatty acid reductase of the lux operon from Photobacterium leiognathi.Lin JW, Chao YF, Weng SFBiochem Biophys Res Commun10.1006/bbrc.1993.12191993Aldehyde Oxidoreductases/*genetics, Amino Acid Sequence, Base Sequence, Biological Evolution, Cloning, Molecular, DNA, Bacterial/genetics/isolation & purification, Escherichia coli/genetics, *Genes, Bacterial, Molecular Sequence Data, *Operon, Photobacterium/enzymology/*genetics, Restriction Mapping, Sequence Homology, Amino Acid, Vibrio/enzymology/geneticsGenetics
Genetics8472957Sequence of the luxD gene encoding acyltransferase of the lux operon from Photobacterium leiognathi.Chao YF, Weng SF, Lin JWGene10.1016/0378-1119(93)90606-41993Acyltransferases/*genetics, Amino Acid Sequence, Bacterial Proteins/*genetics, Base Sequence, DNA, Bacterial, Molecular Sequence Data, *Operon, Photobacterium/enzymology/*genetics, Sequence Homology, Amino AcidEnzymology
Enzymology8776889Crystallization and preliminary crystallographic analysis of the major NAD(P)H: FMN oxidoreductase of Vibrio fischeri ATCC 7744.Koike H, Sasaki H, Tanokura M, Zenno S, Saigo KJ Struct Biol10.1006/jsbi.1996.00701996Crystallization, Crystallography, X-Ray, FMN Reductase, Flavin Mononucleotide, NADH, NADPH Oxidoreductases/*chemistry, Polyethylene Glycols, Protein Conformation, Vibrio/*enzymology
Genetics9753653Identification and analysis of the regulatory region R&R* with the cnf1 gene encoding the cytotoxic necrotizing factor type 1 that closely links to the lux regulon of Vibrio fischeri.Lin JW, Chen LM, Chen HY, Weng SFBiochem Biophys Res Commun10.1006/bbrc.1998.93251998Amino Acid Sequence, Bacterial Toxins/*genetics, Base Sequence, Cytotoxins/*genetics, Escherichia coli/genetics, *Escherichia coli Proteins, Gene Expression Regulation, Bacterial, *Genes, Bacterial, *Genome, Bacterial, Molecular Sequence Data, Regulon, Sequence Alignment, Sequence Analysis, Vibrio/*geneticsPathogenicity
Metabolism10423522Occurrence of P-flavin binding protein in Vibrio fischeri and properties of the protein.Kasai SJ Biochem10.1093/oxfordjournals.jbchem.a0224501999Amino Acid Sequence, Bacterial Proteins/chemistry/isolation & purification, Carrier Proteins/metabolism, Chromatography, Agarose, Chromatography, Thin Layer, Flavins/*chemistry/*metabolism, Flavodoxin/metabolism, Luciferases/chemistry/isolation & purification, Mass Spectrometry, Molecular Sequence Data, Peptide Fragments/chemistry, Vibrio/*chemistryEnzymology
Genetics10720487Identification and analysis of the sap genes from Vibrio fischeri belonging to the ATP-binding cassette gene family required for peptide transport and resistance to antimicrobial peptides.Chen HY, Weng SF, Lin JWBiochem Biophys Res Commun10.1006/bbrc.1999.15062000Amino Acid Sequence, Anti-Bacterial Agents/*pharmacology, Bacterial Outer Membrane Proteins/*genetics, *Bacterial Proteins, Base Sequence, Drug Resistance, Microbial/genetics, Escherichia coli/genetics, Gene Library, *Genes, Bacterial, Haemophilus influenzae/genetics, *Membrane Glycoproteins, Molecular Sequence Data, *Multigene Family, Operon, *Peptides, Regulatory Sequences, Nucleic Acid, Salmonella typhimurium/genetics, Sequence Alignment, Sequence Homology, Amino Acid, Vibrio/drug effects/*genetics/metabolismPathogenicity
Genetics11250084Identification of the cobalamin-dependent methionine synthase gene, metH, in Vibrio fischeri ATCC 7744 by sequencing using genomic DNA as a template.Kasai S, Yamazaki TGene10.1016/s0378-1119(01)00339-020015-Methyltetrahydrofolate-Homocysteine S-Methyltransferase/*genetics, Amino Acid Sequence, Base Sequence, Consensus Sequence, DNA, Bacterial/chemistry/*genetics, Molecular Sequence Data, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Templates, Genetic, Vibrio/enzymology/*geneticsTranscriptome
Genetics14741712Identification and characteristic analysis of the ampC gene encoding beta-lactamase from Vibrio fischeri.Weng SF, Chao YF, Lin JWBiochem Biophys Res Commun10.1016/j.bbrc.2003.12.1712004Ampicillin/pharmacology, Base Sequence, Cloning, Molecular, DNA, Bacterial/genetics, Escherichia coli/genetics, Gene Expression Regulation, Bacterial/genetics, Genes, Bacterial/*genetics, Genes, Reporter/genetics, Genome, Bacterial, Luciferases/analysis/genetics/metabolism, Microbial Sensitivity Tests, Molecular Sequence Data, Penicillin Resistance/genetics, Phylogeny, Promoter Regions, Genetic, Sequence Alignment, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Vibrio/*genetics, beta-Lactamases/*genetics/metabolismEnzymology
Phylogeny18048732Reclassification of Vibrio fischeri, Vibrio logei, Vibrio salmonicida and Vibrio wodanis as Aliivibrio fischeri gen. nov., comb. nov., Aliivibrio logei comb. nov., Aliivibrio salmonicida comb. nov. and Aliivibrio wodanis comb. nov.Urbanczyk H, Ast JC, Higgins MJ, Carson J, Dunlap PVInt J Syst Evol Microbiol10.1099/ijs.0.65081-02007Bacterial Proteins/genetics, Bacterial Typing Techniques, Base Composition, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Genes, rRNA, Molecular Sequence Data, Nucleoside-Phosphate Kinase/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Vibrio/*classification/genetics/metabolismGenetics
Pathogenicity21566392Broad-Host Range Gene Transporter Particles Produced by Aliivibrio fischeri.Chiura HX, Uchiyama N, Kogure KMicrobes Environ10.1264/jsme2.me091532009
25773973Improving survival and storage stability of bacteria recalcitrant to freeze-drying: a coordinated study by European culture collections.Peiren J, Buyse J, De Vos P, Lang E, Clermont D, Hamon S, Begaud E, Bizet C, Pascual J, Ruvira MA, Macian MC, Arahal DRAppl Microbiol Biotechnol10.1007/s00253-015-6476-62015Bacterial Physiological Phenomena/*radiation effects, Biological Specimen Banks, Freeze Drying/*methods, Microbial Viability/*radiation effects, Preservation, Biological/*methods
Cultivation26875878Impact of the freeze-drying process on product appearance, residual moisture content, viability, and batch uniformity of freeze-dried bacterial cultures safeguarded at culture collections.Peiren J, Hellemans A, De Vos PAppl Microbiol Biotechnol10.1007/s00253-016-7359-12016Aliivibrio fischeri/physiology, Bacterial Physiological Phenomena, Batch Cell Culture Techniques, Culture Media/chemistry, Desiccation, Freeze Drying/*methods, *Microbial Viability, Water/analysis
Metabolism34864391Enzymatic conversion of dehydrocoelenterazine to coelenterazine using FMN-bound flavin reductase of NAD(P)H:FMN oxidoreductase.Inouye S, Nakamura M, Hosoya TBiochem Biophys Res Commun10.1016/j.bbrc.2021.11.0892021Aliivibrio fischeri/*enzymology/genetics, Animals, Bacterial Proteins/genetics/*metabolism, Biocatalysis, Biotransformation, Chromatography, High Pressure Liquid, Flavin Mononucleotide/metabolism, Gene Expression, Imidazoles/*metabolism, Kinetics, Luciferases/genetics/*metabolism, Luminescence, Luminescent Measurements, NADH, NADPH Oxidoreductases/genetics/*metabolism, Phenylpyruvic Acids/metabolism, Pyrazines/*metabolism, Renilla/*enzymology/geneticsEnzymology
Genetics35377179Draft Genome Sequence of the Marine Bioluminescent Bacterium Aliivibrio fischeri ATCC 7744.Low EKJ, Goh AEL, Logis J, Lee SW, Fatima A, Yap WS, Lim CSYMicrobiol Resour Announc10.1128/mra.01117-212022
Genetics36354313Complete Genome Sequence of the Type Strain Aliivibrio fischeri DSM 507.Papaioannou KK, Hollensteiner J, Witte JKH, Poehlein A, Daniel RMicrobiol Resour Announc10.1128/mra.00801-222022

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
254Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 507)https://www.dsmz.de/collection/catalogue/details/culture/DSM-507
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41758Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14977
45953Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 13450)https://www.ccug.se/strain?id=13450
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86246Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13867.1StrainInfo: A central database for resolving microbial strain identifiers
119358Curators of the CIPCollection of Institut Pasteur (CIP 103206)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103206