Strain identifier

BacDive ID: 172328

Type strain: No

Species: Escherichia coli

Strain Designation: 96-1243

Strain history: CIP <- 1997, D.L. Woodward, Lab. Dis. Control, Ottawa, Canada: strain 96-1243

NCBI tax ID(s): 562 (species)

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General

@ref: 118354

BacDive-ID: 172328

keywords: Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped

description: Escherichia coli 96-1243 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from Human, Stool.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 118354
  • history: CIP <- 1997, D.L. Woodward, Lab. Dis. Control, Ottawa, Canada: strain 96-1243

doi: 10.13145/bacdive172328.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 118354

domain: Bacteria

phylum: Pseudomonadota

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

strain designation: 96-1243

type strain: no

Morphology

cell morphology

  • @ref: 118354
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 118354
  • hemolysis ability: 1

Culture and growth conditions

culture medium

  • @ref: 118354
  • name: CIP Medium 3
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

  • @ref: 118354
  • growth: positive
  • type: growth
  • temperature: 5-41

Physiology and metabolism

oxygen tolerance

  • @ref: 118354
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 118354
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11835429864mannitol+fermentation
11835416947citrate-carbon source
1183544853esculin-hydrolysis
11835417234glucose+fermentation
11835417716lactose+fermentation
11835417632nitrate+reduction
11835416301nitrite+reduction
11835415792malonate-assimilation
118354132112sodium thiosulfate-builds gas from
11835417234glucose+degradation

antibiotic resistance

  • @ref: 118354
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 118354
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11835415688acetoin-
11835417234glucose+

enzymes

@refvalueactivityec
118354oxidase-
118354beta-galactosidase+3.2.1.23
118354alcohol dehydrogenase-1.1.1.1
118354gelatinase-
118354catalase+1.11.1.6
118354lysine decarboxylase+4.1.1.18
118354ornithine decarboxylase+4.1.1.17
118354phenylalanine ammonia-lyase-4.3.1.24
118354tryptophan deaminase-
118354urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118354-++--+----++-+-+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
118354+++++++++++++++-+--+++-++----+-+-+--+--+---++--+++----++---++----++-++-----+---++-----+--++++++-+-+

Isolation, sampling and environmental information

isolation

  • @ref: 118354
  • sample type: Human, Stool
  • geographic location: Prince Edward Island
  • country: Canada
  • origin.country: CAN
  • continent: North America
  • isolation date: 1996

Safety information

risk assessment

  • @ref: 118354
  • biosafety level: 3
  • biosafety level comment: Risk group (French classification)

External links

@ref: 118354

culture collection no.: CIP 105213

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
68382Automatically annotated from API zym
118354Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105213Collection of Institut Pasteur (CIP 105213)