Strain identifier
BacDive ID: 17207
Type strain: 
Species: Prosthecobacter dejongeii
Strain Designation: Fc1
Strain history: <- ATCC <- J. T. Staley <- M. van Ert; Fc1
NCBI tax ID(s): 48465 (species)
version 8.1 (current version)
General
@ref: 4653
BacDive-ID: 17207
DSM-Number: 12251
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Prosthecobacter dejongeii Fc1 is a mesophilic bacterium that was isolated from raw sewage.
NCBI tax id
- NCBI tax id: 48465
- Matching level: species
strain history
- @ref: 4653
- history: <- ATCC <- J. T. Staley <- M. van Ert; Fc1
doi: 10.13145/bacdive17207.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/verrucomicrobiota
- domain: Bacteria
- phylum: Verrucomicrobiota
- class: Verrucomicrobiia
- order: Verrucomicrobiales
- family: Verrucomicrobiaceae
- genus: Prosthecobacter
- species: Prosthecobacter dejongeii
- full scientific name: Prosthecobacter dejongeii Hedlund et al. 1998
@ref: 4653
domain: Bacteria
phylum: Verrucomicrobia
class: Verrucomicrobiae
order: Verrucomicrobiales
family: Verrucomicrobiaceae
genus: Prosthecobacter
species: Prosthecobacter dejongeii
full scientific name: Prosthecobacter dejongeii Hedlund et al. 1998
strain designation: Fc1
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 90.842 | |
| 69480 | 99.996 | negative |
Culture and growth conditions
culture medium
- @ref: 4653
- name: MMB MEDIUM (DSMZ Medium 628)
- growth: yes
- link: https://mediadive.dsmz.de/medium/628
- composition: Name: MMB MEDIUM (DSMZ Medium 628) Composition: Glucose 1.0 g/l MgSO4 x 7 H2O 0.594 g/l (NH4)2SO4 0.25 g/l Nitrilotriacetic acid 0.2 g/l Yeast extract 0.15 g/l Peptone 0.15 g/l CaCl2 x 2 H2O 0.0667 g/l ZnSO4 x 7 H2O 0.001095 g/l FeSO4 x 7 H2O 0.0005 g/l Na-EDTA 0.00025 g/l (NH4)6Mo7O24 x 4 H2O 0.000185 g/l MnSO4 x H2O 0.000154 g/l Calcium pantothenate 5e-05 g/l Pyridoxine hydrochloride 5e-05 g/l Riboflavin 5e-05 g/l Nicotinamide 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l CuSO4 x 5 H2O 3.92e-05 g/l Co(NO3)2 x 6 H2O 2.48e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l Na2B4O7 x 10 H2O 1.77e-05 g/l Vitamin B12 1e-06 g/l Distilled water
culture temp
- @ref: 4653
- growth: positive
- type: growth
- temperature: 26
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 99 |
| 69480 | no | 99.999 |
Isolation, sampling and environmental information
isolation
- @ref: 4653
- sample type: raw sewage
- geographic location: NC, Chapel Hill
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Wastewater
taxonmaps
- @ref: 69479
- File name: preview.99_83988.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_151;96_502;97_34148;98_50617;99_83988&stattab=map
- Last taxonomy: Prosthecobacter dejongeii
- 16S sequence: U60012
- Sequence Identity:
- Total samples: 13
- soil counts: 2
- aquatic counts: 4
- animal counts: 7
Safety information
risk assessment
- @ref: 4653
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Prosthecobacter FC1 16S ribosomal RNA gene, partial sequence
- accession: U60012
- length: 1468
- database: ena
- NCBI tax ID: 48465
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Prosthecobacter dejongeii DSM 12251 | GCA_014203045 | scaffold | ncbi | 48465 |
| 66792 | Prosthecobacter dejongeii strain DSM 12251 | 48465.7 | wgs | patric | 48465 |
| 66792 | Prosthecobacter dejongeii DSM 12251 | 2861697045 | draft | img | 48465 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 99 | no |
| flagellated | no | 94.039 | no |
| gram-positive | no | 96.506 | no |
| anaerobic | no | 97.865 | no |
| aerobic | yes | 89.926 | no |
| halophile | no | 91.42 | no |
| spore-forming | no | 94.697 | no |
| glucose-util | yes | 85.776 | no |
| thermophile | no | 98.987 | yes |
| motile | no | 82.638 | no |
| glucose-ferment | no | 87.2 | no |
External links
@ref: 4653
culture collection no.: DSM 12251, ATCC 27091
straininfo link
- @ref: 86206
- straininfo: 110596
literature
- topic: Phylogeny
- Pubmed-ID: 24170774
- title: Prosthecobacter algae sp. nov., isolated from activated sludge using algal metabolites.
- authors: Lee J, Park B, Woo SG, Lee J, Park J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.052787-0
- year: 2013
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Microalgae/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Sewage/*microbiology, Verrucomicrobia/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry, Water Purification
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4653 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12251) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12251 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 86206 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID110596.1 | StrainInfo: A central database for resolving microbial strain identifiers |