Strain identifier

BacDive ID: 172

Type strain: No

Species: Gleimia europaea

Strain history: CIP <- 1998, G. Funke, Dep. Med. Microbiol., Zürich, Switzerland: strain DMMZ 1113

NCBI tax ID(s): 66228 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4192

BacDive-ID: 172

DSM-Number: 11077

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-positive, rod-shaped

description: Gleimia europaea DSM 11077 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from breast abscess.

NCBI tax id

  • NCBI tax id: 66228
  • Matching level: species

strain history

@refhistory
4192<- G. Funke, DMMZ 1113
326981998, G. Funke, Dep. Med. Microbiol., Zürich, Switzerland: strain DMMZ 1113
119142CIP <- 1998, G. Funke, Dep. Med. Microbiol., Zürich, Switzerland: strain DMMZ 1113

doi: 10.13145/bacdive172.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Gleimia
  • species: Gleimia europaea
  • full scientific name: Gleimia europaea (Funke et al. 1997) Nouioui et al. 2018
  • synonyms

    • @ref: 20215
    • synonym: Actinomyces europaeus

@ref: 4192

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Gleimia

species: Gleimia europaea

full scientific name: Gleimia europaea (Funke et al. 1997) Nouioui et al. 2018

type strain: no

Morphology

cell morphology

  • @ref: 119142
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 119142

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4192COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
32698MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
119142CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
4192positivegrowth37mesophilic
32698positivegrowth37mesophilic
119142positivegrowth25-41
119142nogrowth10psychrophilic
119142nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119142
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
119142NaClpositivegrowth0 %
119142NaClnogrowth2 %
119142NaClnogrowth4 %
119142NaClnogrowth6 %
119142NaClnogrowth8 %
119142NaClnogrowth10 %

murein

  • @ref: 4192
  • murein short key: A11.51
  • type: A5alpha L-Lys-L-Lys-D-Glu

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol+builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371raffinose-builds acid from16634
68371melezitose+builds acid from6731
68371inulin-builds acid from15443
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371methyl alpha-D-mannoside+builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol+builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
119142esculin-hydrolysis4853
119142hippurate+hydrolysis606565
119142nitrate-reduction17632
119142nitrite-reduction16301
119142nitrate+respiration17632
68379nitrate-reduction17632
68379esculin+hydrolysis4853
68379urea-hydrolysis16199
68379gelatin-hydrolysis5291
68379D-glucose+fermentation17634
68379D-ribose+fermentation16988
68379D-xylose-fermentation65327
68379D-mannitol-fermentation16899
68379maltose+fermentation17306
68379lactose-fermentation17716
68379sucrose+fermentation17992
68379glycogen+fermentation28087
68380urea-hydrolysis16199
68380arginine-hydrolysis29016
68380D-mannose+fermentation16024
68380raffinose-fermentation16634
68380L-glutamate-degradation29985
68380nitrate-reduction17632
68380tryptophan-energy source27897
68381arginine-hydrolysis29016
68381D-ribose+builds acid from16988
68381D-mannitol-builds acid from16899
68381sorbitol-builds acid from30911
68381lactose-builds acid from17716
68381trehalose+builds acid from27082
68381raffinose-builds acid from16634
68381sucrose+builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381alpha-cyclodextrin-builds acid from40585
68381hippurate-hydrolysis606565
68381glycogen-builds acid from28087
68381pullulan+builds acid from27941
68381maltose+builds acid from17306
68381melibiose+builds acid from28053
68381melezitose+builds acid from6731
68381methyl beta-D-glucopyranoside-builds acid from320055
68381D-tagatose-builds acid from16443
68381urea-hydrolysis16199

antibiotic resistance

  • @ref: 119142
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
11914235581indoleno
6838035581indoleno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6838115688acetoin-
6838035581indole-
11914215688acetoin-
11914217234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
68380serine arylamidase+
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68379catalase-1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
119142oxidase-
119142beta-galactosidase+3.2.1.23
119142alcohol dehydrogenase-1.1.1.1
119142gelatinase-
119142amylase-
119142DNase-
119142caseinase-3.4.21.50
119142catalase-1.11.1.6
119142tween esterase-
119142gamma-glutamyltransferase+2.3.2.2
119142lecithinase-
119142lipase-
119142lysine decarboxylase-4.1.1.18
119142ornithine decarboxylase-4.1.1.17
119142phenylalanine ammonia-lyase-4.3.1.24
119142protease-
119142tryptophan deaminase-
119142urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    52749C12:00.412
    52749C14:01.914
    52749C16:025.416
    52749C17:00.717
    52749C18:012.718
    52749C16:1 ω7c2.715.819
    52749C16:1 ω9c0.515.774
    52749C18:1 ω9c28.717.769
    52749C18:2 ω6,9c/C18:0 ANTE25.117.724
    52749Unidentified1.318.215
    52749Unidentified0.819.572
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
52749---+-++-+---++--+-++-

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
52749--++-++-----++-+----
119142--++-+----++-+-+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119142+------+-++++------++---+--+-+/-+/-+/--+-+/-+--+----++--+/-

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
52749--++-++---+------+++++-+++--+

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
52749-++-+-+---+-+----++-----++++----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
4192breast abscess
52749Human abscess,mammary,54-yr-old woman
119142Human, Breast abscessZurichSwitzerlandCHEEurope1994

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Other#Abscess
#Host Body-Site#Other#Thoracic segment

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
41922Risk group (German classification)
1191422Risk group (French classification)

External links

@ref: 4192

culture collection no.: DSM 11077, CCUG 35467, DMMZ 1113, CIP 105400

straininfo link

  • @ref: 69854
  • straininfo: 49023

Reference

@idauthorscataloguedoi/urltitle
4192Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11077)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11077
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32698Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17415
52749Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 35467)https://www.ccug.se/strain?id=35467
68371Automatically annotated from API 50CH acid
68379Automatically annotated from API Coryne
68380Automatically annotated from API rID32A
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69854Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49023.1StrainInfo: A central database for resolving microbial strain identifiers
119142Curators of the CIPCollection of Institut Pasteur (CIP 105400)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105400