Strain identifier

BacDive ID: 17172

Type strain: Yes

Species: Veillonella dispar

Strain Designation: ERN

Strain history: CIP <- 2003, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 10221 <- ATCC <- M. Rogosa, ERN <- M. Pelczar

NCBI tax ID(s): 546273 (strain), 39778 (species)

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General

@ref: 9045

BacDive-ID: 17172

DSM-Number: 20735

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, coccus-shaped, human pathogen

description: Veillonella dispar ERN is an anaerobe, mesophilic, coccus-shaped human pathogen that was isolated from human mouth.

NCBI tax id

NCBI tax idMatching level
39778species
546273strain

strain history

@refhistory
9045<- ATCC <- M. Rogosa, ERN <- M. Pelczar <- A. Prévot
118945CIP <- 2003, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 10221 <- ATCC <- M. Rogosa, ERN <- M. Pelczar

doi: 10.13145/bacdive17172.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Negativicutes
  • order: Veillonellales
  • family: Veillonellaceae
  • genus: Veillonella
  • species: Veillonella dispar
  • full scientific name: Veillonella dispar (Rogosa 1965) Mays et al. 1982

  • synonyms

    • @ref: 20215
    • synonym: Veillonella alcalescens subsp. dispar

@ref: 9045

domain: Bacteria

phylum: Firmicutes

class: Negativicutes

order: Selenomonadales

family: Veillonellaceae

genus: Veillonella

species: Veillonella dispar

full scientific name: Veillonella dispar (Rogosa 1965) Mays et al. 1982

strain designation: ERN

type strain: yes

Morphology

cell morphology

@refcell shapegram stainconfidencemotility
68367coccus-shaped
69480negative99.96
118945oval-shapednegativeno

colony morphology

@refincubation periodhemolysis ability
90451-2 days
604082-3 days
1189451

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9045COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
9045VEILLONELLA MEDIUM (DSMZ Medium 136)yeshttps://mediadive.dsmz.de/medium/136Name: VEILLONELLA MEDIUM (DSMZ Medium 136) Composition: Na-(DL)-lactate 7.5 g/l Trypticase 5.0 g/l Yeast extract 3.0 g/l Glucose 1.0 g/l Na-thioglycolate 0.75 g/l Putrescine 0.003 g/l Resazurin 0.001 g/l Tween 80 Distilled water
39804MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
118945CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20

culture temp

@refgrowthtypetemperaturerange
9045positivegrowth37mesophilic
39804positivegrowth37mesophilic
60408positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
9045anaerobe
60408anaerobe
69480anaerobe99.124
118945anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.946

murein

  • @ref: 9045
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836727082trehalose-builds acid from
6836762345L-rhamnose-builds acid from
6836730911sorbitol-builds acid from
6836716634raffinose-builds acid from
683676731melezitose-builds acid from
6836716024D-mannose-builds acid from
6836717057cellobiose-builds acid from
6836717754glycerol-builds acid from
683674853esculin-hydrolysis
683675291gelatin-hydrolysis
6836730849L-arabinose-builds acid from
6836765327D-xylose-builds acid from
6836717814salicin-builds acid from
6836717306maltose-builds acid from
6836717992sucrose-builds acid from
6836717716lactose-builds acid from
6836716899D-mannitol-builds acid from
6836717634D-glucose-builds acid from
6836716199urea-hydrolysis
6836727897tryptophan-energy source
11894517108D-arabinose-degradation
11894515824D-fructose-degradation
11894517634D-glucose+degradation
11894565327D-xylose-degradation
11894517057cellobiose-degradation
11894517716lactose-degradation
11894517306maltose-degradation
11894517814salicin-degradation
11894517992sucrose-degradation
1189454853esculin-hydrolysis
11894517632nitrate+reduction
11894516301nitrite-reduction
11894517632nitrate+respiration
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6836735581indoleno
11894535581indoleno
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6838035581indole-
6836735581indole-

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68367beta-glucosidase-3.2.1.21
68367gelatinase-
68367urease-3.5.1.5
118945oxidase-
118945beta-galactosidase-3.2.1.23
118945gelatinase-
118945amylase-
118945DNase-
118945caseinase-3.4.21.50
118945catalase+1.11.1.6
118945tween esterase-
118945lecithinase-
118945lipase-
118945protease-
118945urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118945-----------+--------

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRECOCC
9045--------------------+

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
9045--------------+/---------------
9045-----------------------------

Isolation, sampling and environmental information

isolation

@refsample type
9045human mouth
60408Human oral cavity
118945Human, Mouth

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Mouth

taxonmaps

  • @ref: 69479
  • File name: preview.99_1576.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_39;96_80;97_84;98_1243;99_1576&stattab=map
  • Last taxonomy: Veillonella
  • 16S sequence: X84006
  • Sequence Identity:
  • Total samples: 5887
  • soil counts: 4
  • aquatic counts: 15
  • animal counts: 5852
  • plant counts: 16

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
9045yes, in single cases1Risk group (German classification)
1189451Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Veillonella dispar strain ATCC 17748 16S ribosomal RNA gene, partial sequenceAY9957701498ena39778
20218Veillonella dispar strain DSM 20735 16S ribosomal RNA gene, partial sequenceHQ012014937ena39778
20218V.dispar 16S rRNA geneX840061513ena39778
9045Veillonella dispar 16S ribosomal RNA gene, partial sequenceAF4396391375ena39778

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Veillonella dispar NCTC11831GCA_900637515completencbi39778
66792Veillonella dispar ATCC 17748GCA_000160015scaffoldncbi546273
66792Veillonella dispar ATCC 17748546273.3wgspatric546273
66792Veillonella dispar ATCC 17748546273.14wgspatric546273
66792Veillonella dispar strain NCTC1183139778.224completepatric39778
66792Veillonella dispar ATCC 17748643886074draftimg546273
66792Veillonella dispar NCTC118312841244012completeimg39778

GC content

  • @ref: 9045
  • GC-content: 38.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno96.345no
gram-positiveno90.712no
anaerobicyes99.467yes
aerobicno97.224no
halophileno84.152no
spore-formingno87.527no
thermophileno99.245yes
glucose-utilyes54.843no
motileno90.778no
glucose-fermentno51.494no

External links

@ref: 9045

culture collection no.: CCUG 54948, NCTC 11831, DSM 20735, ATCC 17748, CIP 108002, AIP 10221

straininfo link

  • @ref: 86171
  • straininfo: 44531

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism16508276Effects of Streptococcus mutans gtfC deficiency on mixed oral biofilms in vitro.Thurnheer T, van der Ploeg JR, Giertsen E, Guggenheim BCaries Res10.1159/0000910652006Biofilms/*growth & development, Dental Plaque/*microbiology, Diffusion, Extracellular Matrix/*physiology, Genes, Bacterial, Glucans/biosynthesis, Glucosyltransferases/genetics/*metabolism, Hydroxyapatites, Macromolecular Substances/metabolism, Microscopy, Confocal, Streptococcus mutans/*enzymology/geneticsEnzymology
Phylogeny33263509Veillonella nakazawae sp. nov., an anaerobic Gram-negative coccus isolated from the oral cavity of Japanese children.Mashima I, Theodorea CF, Djais AA, Kunihiro T, Kawamura Y, Otomo M, Saitoh M, Tamai R, Kiyoura YInt J Syst Evol Microbiol10.1099/ijsem.0.0045832020Bacterial Typing Techniques, Base Composition, Child, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Humans, Japan, Mouth/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Veillonella/*classification/isolation & purificationPathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9045Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20735)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20735
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39804Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5577
60408Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 54948)https://www.ccug.se/strain?id=54948
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68367Automatically annotated from API 20A
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86171Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID44531.1StrainInfo: A central database for resolving microbial strain identifiers
118945Curators of the CIPCollection of Institut Pasteur (CIP 108002)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108002