Strain identifier

BacDive ID: 17161

Type strain: Yes

Species: Selenomonas artemidis

Strain history: CIP <- 2005, JCM <- ATCC 43528 <- L. V. H. Moore: strain VPI D22B-14

NCBI tax ID(s): 1123249 (strain), 671224 (species)

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General

@ref: 8261

BacDive-ID: 17161

DSM-Number: 19719

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative

description: Selenomonas artemidis DSM 19719 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human gingival crevice.

NCBI tax id

NCBI tax idMatching level
671224species
1123249strain

strain history

@refhistory
8261<- JCM <- ATCC <- L. V. H. Moore; VPI D22B-14
67770ATCC 43528 <-- L. V. H. Moore VPI D22B-14.
116508CIP <- 2005, JCM <- ATCC 43528 <- L. V. H. Moore: strain VPI D22B-14

doi: 10.13145/bacdive17161.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Negativicutes
  • order: Selenomonadales
  • family: Selenomonadaceae
  • genus: Selenomonas
  • species: Selenomonas artemidis
  • full scientific name: Selenomonas artemidis Moore et al. 1987

@ref: 8261

domain: Bacteria

phylum: Firmicutes

class: Negativicutes

order: Selenomonadales

family: Selenomonadaceae

genus: Selenomonas

species: Selenomonas artemidis

full scientific name: Selenomonas artemidis Moore et al. 1987

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.807
116508negativerod-shapedyes

colony morphology

  • @ref: 116508

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8261COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8261CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
42017MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
116508CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20
116508CIP Medium 433yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=433

culture temp

@refgrowthtypetemperaturerange
8261positivegrowth37mesophilic
42017positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
8261anaerobe
69480anaerobe100
116508anaerobe

spore formation

@refspore formationconfidence
69481no92
69480no99.975

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11650817632nitrate+reduction
11650816301nitrite-reduction
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate+reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
11650835581indoleno
6838035581indoleno

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
116508oxidase-
116508alcohol dehydrogenase-1.1.1.1
116508catalase-1.11.1.6
116508lysine decarboxylase-4.1.1.18
116508ornithine decarboxylase-4.1.1.17
116508urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116508----------++--------

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
8261--------------+--------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
8261human gingival creviceUSAUSANorth America
67770Subgingival crevice of a person with juvenile periodontitis
116508Subgingival crevice of a person with juvenile periodontitisUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Gingiva
#Host Body-Site#Oral cavity and airways#Tooth

taxonmaps

  • @ref: 69479
  • File name: preview.99_14168.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_55;96_1972;97_4441;98_5694;99_14168&stattab=map
  • Last taxonomy: Selenomonas artemidis subclade
  • 16S sequence: GQ422716
  • Sequence Identity:
  • Total samples: 214
  • aquatic counts: 3
  • animal counts: 210
  • plant counts: 1

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
82612Risk group (German classification)
1165081Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Selenomonas artemidis strain ATCC 43528 16S ribosomal RNA gene, partial sequenceGQ4227161520ena671224
67770Selenomonas artemidis gene for 16S ribosomal RNA, partial sequence, strain: JCM 8543LC0372191505ena671224

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Selenomonas artemidis DSM 197191123249.3wgspatric1123249
66792Selenomonas artemidis DSM 197192526164534draftimg1123249
67770Selenomonas artemidis DSM 19719GCA_000426665scaffoldncbi1123249

GC content

@refGC-contentmethod
826158
6777058thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno92no
motileyes76.157no
flagellatedno78.921no
gram-positiveno97.929no
anaerobicyes99.423no
aerobicno98.088yes
halophileno93.364no
spore-formingno85.505no
glucose-utilyes69.055no
thermophileno76.606yes
glucose-fermentno50.783no

External links

@ref: 8261

culture collection no.: DSM 19719, ATCC 43528, JCM 8543, VPI D22B-14, BCRC 14409, CIP 108628

straininfo link

  • @ref: 86160
  • straininfo: 41895

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8261Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19719)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19719
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42017Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6278
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86160Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41895.1StrainInfo: A central database for resolving microbial strain identifiers
116508Curators of the CIPCollection of Institut Pasteur (CIP 108628)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108628