Strain identifier
BacDive ID: 17120
Type strain: 
Species: Dendrosporobacter quercicolus
Strain history: <- ATCC <- B.J. Cosenza
NCBI tax ID(s): 1121386 (strain), 146817 (species)
version 8.1 (current version)
General
@ref: 891
BacDive-ID: 17120
DSM-Number: 1736
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile
description: Dendrosporobacter quercicolus DSM 1736 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from discolored tissue in living oak tree.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1121386 | strain |
| 146817 | species |
strain history
- @ref: 891
- history: <- ATCC <- B.J. Cosenza
doi: 10.13145/bacdive17120.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Negativicutes
- order: Selenomonadales
- family: Sporomusaceae
- genus: Dendrosporobacter
- species: Dendrosporobacter quercicolus
- full scientific name: Dendrosporobacter quercicolus (Stankewich et al. 1971) Strömpl et al. 2000
synonyms
- @ref: 20215
- synonym: Clostridium quercicolum
@ref: 891
domain: Bacteria
phylum: Firmicutes
class: Negativicutes
order: Selenomonadales
family: Sporomusaceae
genus: Dendrosporobacter
species: Dendrosporobacter quercicolus
full scientific name: Dendrosporobacter quercicolus (Stankewich et al. 1971) Strömpl et al. 2000
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.431 | |
| 69480 | 99.806 | negative |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 891 | PY + X MEDIUM (DSMZ Medium 104b) | yes | https://mediadive.dsmz.de/medium/104b | Name: PY + X MEDIUM (DSMZ Medium 104b; with strain-specific modifications) Composition: Yeast extract 10.0 g/l D-Fructose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water |
| 891 | CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) | yes | https://mediadive.dsmz.de/medium/110 | Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water |
culture temp
- @ref: 891
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 891 | anaerobe | |
| 69480 | anaerobe | 99.658 |
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 99.475
Isolation, sampling and environmental information
isolation
- @ref: 891
- sample type: discolored tissue in living oak tree
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant |
Safety information
risk assessment
- @ref: 891
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Clostridium quercicolum 16S ribosomal RNA | M59110 | 1512 | ena | 146817 |
| 891 | Clostridium quercicolum 16S rRNA gene, strain DSM 1736(T) | AJ010962 | 1506 | ena | 146817 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Dendrosporobacter quercicolus DSM 1736 | GCA_900104455 | scaffold | ncbi | 146817 |
| 66792 | Dendrosporobacter quercicolus DSM 1736 | GCA_013303165 | contig | ncbi | 1121386 |
| 66792 | Dendrosporobacter quercicolus DSM 1736 | 1121386.4 | wgs | patric | 1121386 |
| 66792 | Dendrosporobacter quercicolus strain DSM 1736 | 146817.6 | wgs | patric | 146817 |
| 66792 | Dendrosporobacter quercicolus DSM 1736 | 2622736508 | draft | img | 1121386 |
GC content
- @ref: 891
- GC-content: 52.0-54.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 86 | no |
| motile | yes | 88.951 | no |
| flagellated | no | 55.046 | no |
| gram-positive | no | 95.008 | no |
| anaerobic | yes | 99.131 | no |
| aerobic | no | 97.757 | yes |
| halophile | no | 96.324 | no |
| spore-forming | yes | 82.745 | no |
| thermophile | no | 96.351 | yes |
| glucose-util | yes | 71.393 | no |
| glucose-ferment | no | 79.162 | no |
External links
@ref: 891
culture collection no.: DSM 1736, ATCC 25974
straininfo link
- @ref: 86120
- straininfo: 38737
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 891 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1736) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1736 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 86120 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38737.1 | StrainInfo: A central database for resolving microbial strain identifiers |