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Strain identifier

BacDive ID: 17120

Type strain: Yes

Species: Dendrosporobacter quercicolus

Strain history: <- ATCC <- B.J. Cosenza

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General

@ref: 891

BacDive-ID: 17120

DSM-Number: 1736

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Dendrosporobacter quercicolus DSM 1736 is an anaerobe, mesophilic bacterium that was isolated from discolored tissue in living oak tree.

NCBI tax id

NCBI tax idMatching level
146817species
1121386strain

strain history: <- ATCC <- B.J. Cosenza

doi: 10.13145/bacdive17120.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Negativicutes
  • order: Selenomonadales
  • family: Sporomusaceae
  • genus: Dendrosporobacter
  • species: Dendrosporobacter quercicolus
  • full scientific name: Dendrosporobacter quercicolus (Stankewich et al. 1971) Strömpl et al. 2000
  • synonyms

    • @ref: 20215
    • synonym: Clostridium quercicolum

@ref: 891

domain: Bacteria

phylum: Firmicutes

class: Negativicutes

order: Selenomonadales

family: Sporomusaceae

genus: Dendrosporobacter

species: Dendrosporobacter quercicolus

full scientific name: Dendrosporobacter quercicolus (Stankewich et al. 1971) Strömpl et al. 2000

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes60.228
6948082.288negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
891PY + X MEDIUM (DSMZ Medium 104b)yeshttps://mediadive.dsmz.de/medium/104bName: PY + X MEDIUM (DSMZ Medium 104b; with strain-specific modifications) Composition: Yeast extract 10.0 g/l D-Fructose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
891CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

culture temp

  • @ref: 891
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
891anaerobe
69480anaerobe99.563

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 73.551

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 98.778

Isolation, sampling and environmental information

isolation

  • @ref: 891
  • sample type: discolored tissue in living oak tree
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant

Safety information

risk assessment

  • @ref: 891
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Clostridium quercicolum 16S ribosomal RNAM591101512ena146817
891Clostridium quercicolum 16S rRNA gene, strain DSM 1736(T)AJ0109621506ena146817

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Dendrosporobacter quercicolus DSM 1736GCA_900104455scaffoldncbi146817
66792Dendrosporobacter quercicolus DSM 1736 DSM 1736GCA_013303165contigncbi1121386
66792Dendrosporobacter quercicolus DSM 17361121386.4wgspatric1121386
66792Dendrosporobacter quercicolus strain DSM 1736146817.6wgspatric146817
66792Dendrosporobacter quercicolus DSM 17362622736508draftimg1121386
66792Xanthomonas translucens B2GCA_001542205scaffoldpatric343
66792Vibrio breoganii 10N.261.54.C7GCA_002877305scaffoldpatric553239

GC content

  • @ref: 891
  • GC-content: 52.0-54.0

External links

@ref: 891

culture collection no.: DSM 1736, ATCC 25974

straininfo link

@refpassport
20218http://www.straininfo.net/strains/157531
20218http://www.straininfo.net/strains/104724

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
891Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1736)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1736
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)