Strain identifier

BacDive ID: 17115

Type strain: Yes

Species: Anaeromusa acidaminophila

Strain Designation: DK glu 16

Strain history: <- H.J. Nanninga, DK glu 16

NCBI tax ID(s): 1120992 (strain), 81464 (species)

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General

@ref: 1483

BacDive-ID: 17115

DSM-Number: 3853

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile

description: Anaeromusa acidaminophila DK glu 16 is an anaerobe, mesophilic, motile bacterium that was isolated from anaerobic purification plant.

NCBI tax id

NCBI tax idMatching level
1120992strain
81464species

strain history

  • @ref: 1483
  • history: <- H.J. Nanninga, DK glu 16

doi: 10.13145/bacdive17115.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Negativicutes
  • order: Selenomonadales
  • family: Sporomusaceae
  • genus: Anaeromusa
  • species: Anaeromusa acidaminophila
  • full scientific name: Anaeromusa acidaminophila Baena et al. 1999

@ref: 1483

domain: Bacteria

phylum: Firmicutes

class: Negativicutes

order: Selenomonadales

family: Sporomusaceae

genus: Anaeromusa

species: Anaeromusa acidaminophila

full scientific name: Anaeromusa acidaminophila Baena et al. 1999

strain designation: DK glu 16

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes95.479
6948099.59negative

colony morphology

  • @ref: 1483
  • incubation period: 1-2 days

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_3853_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_3853_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_3853_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_3853_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_3853_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1483CHOPPED MEAT MEDIUM (DSMZ Medium 78)yeshttps://mediadive.dsmz.de/medium/78Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water
1483WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 1483
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
1483anaerobe
69480anaerobe99.999

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
1483----------------+------------

Isolation, sampling and environmental information

isolation

  • @ref: 1483
  • sample type: anaerobic purification plant
  • country: Netherlands
  • origin.country: NLD
  • continent: Europe

isolation source categories

Cat1Cat2
#Engineered
#Condition#Anoxic (anaerobic)

taxonmaps

  • @ref: 69479
  • File name: preview.99_13223.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1373;96_5920;97_7124;98_8799;99_13223&stattab=map
  • Last taxonomy: Anaeroarcus burkinensis
  • 16S sequence: AF071415
  • Sequence Identity:
  • Total samples: 917
  • soil counts: 30
  • aquatic counts: 785
  • animal counts: 60
  • plant counts: 42

Safety information

risk assessment

  • @ref: 1483
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 1483
  • description: Anaeromusa acidaminophila 16S ribosomal RNA gene, partial sequence
  • accession: AF071415
  • length: 1530
  • database: ena
  • NCBI tax ID: 81464

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Anaeromusa acidaminophila DSM 3853GCA_000374545scaffoldncbi1120992
66792Anaeromusa acidaminophila DSM 38531120992.3wgspatric1120992
66792Anaeromusa acidaminophila DSM 38532518285615draftimg1120992

GC content

  • @ref: 1483
  • GC-content: 48.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno89no
motileyes87.428no
flagellatedno60.784no
gram-positiveno95.923no
anaerobicyes99.453yes
aerobicno98.049no
halophileno96.73no
spore-formingno50no
glucose-utilyes72.621no
thermophileno95.749yes
glucose-fermentno58.206no

External links

@ref: 1483

culture collection no.: DSM 3853, ATCC 43704

straininfo link

  • @ref: 86115
  • straininfo: 46065

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1483Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3853)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3853
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
86115Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46065.1StrainInfo: A central database for resolving microbial strain identifiers