Strain identifier

BacDive ID: 17105

Type strain: Yes

Species: Tsukamurella strandjordii

Strain Designation: 32-92

Strain history: CIP <- 2002, ATCC <- M.B. Coyle: strain 32-92 <- C. Clausen

NCBI tax ID(s): 147577 (species)

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General

@ref: 11870

BacDive-ID: 17105

DSM-Number: 44573

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, human pathogen

description: Tsukamurella strandjordii 32-92 is an aerobe, mesophilic, Gram-positive human pathogen that was isolated from blood from a 5-year-old girl with acute mycelogenous leukemia.

NCBI tax id

  • NCBI tax id: 147577
  • Matching level: species

strain history

@refhistory
11870<- A. F. Yassin, Univ. Bonn
67770ATCC BAA-173 <-- M. B. Coyle 32-92 <-- C. Clausen.
67771<- JCM <- ATCC BAA-173 <- M. B. Coyle 32-92 <- C. Clausen
123326CIP <- 2002, ATCC <- M.B. Coyle: strain 32-92 <- C. Clausen

doi: 10.13145/bacdive17105.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Tsukamurellaceae
  • genus: Tsukamurella
  • species: Tsukamurella strandjordii
  • full scientific name: Tsukamurella strandjordii corrig. Kattar et al. 2002

  • synonyms

    • @ref: 20215
    • synonym: Tsukamurella strandjordae

@ref: 11870

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Tsukamurellaceae

genus: Tsukamurella

species: Tsukamurella strandjordii

full scientific name: Tsukamurella strandjordii Kattar et al. 2002

strain designation: 32-92

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotility
67771positive
123326positiverod-shapedno

colony morphology

  • @ref: 123326
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11870TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
33164MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123326CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
11870positivegrowth28mesophilic
33164positivegrowth30mesophilic
61196positivegrowth35mesophilic
61196positivegrowth37mesophilic
67770positivegrowth35mesophilic
67771positivegrowth35mesophilic
123326positivegrowth15-37
123326nogrowth10psychrophilic
123326nogrowth41thermophilic
123326nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
61196aerobe
61196microaerophile
67771aerobe
123326obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
123326NaClpositivegrowth0-6 %
123326NaClnogrowth8 %
123326NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12332616947citrate-carbon source
1233264853esculin+hydrolysis
123326606565hippurate-hydrolysis
12332617632nitrate-reduction
12332616301nitrite-reduction
12332617632nitrate-respiration

antibiotic resistance

  • @ref: 123326
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 123326
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12332615688acetoin-
12332617234glucose-

enzymes

@refvalueactivityec
123326oxidase-
123326beta-galactosidase+3.2.1.23
123326alcohol dehydrogenase-1.1.1.1
123326gelatinase-
123326amylase+
123326DNase+
123326caseinase+3.4.21.50
123326catalase+1.11.1.6
123326tween esterase+
123326gamma-glutamyltransferase+2.3.2.2
123326lecithinase-
123326lipase-
123326lysine decarboxylase-4.1.1.18
123326ornithine decarboxylase-4.1.1.17
123326phenylalanine ammonia-lyase-4.3.1.24
123326protease-
123326tryptophan deaminase-
123326urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123326-+++-+----+----++-+-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123326+++++--+-++--------+----+-+-+--+++-++------------+---+-+---++-+----------+-+--+-+---+-+-+++++++-+--

Isolation, sampling and environmental information

isolation

@refsample typeisolation date
11870blood from a 5-year-old girl with acute mycelogenous leukemia
61196Human blood,5-yr-old f,acute myelogenous leukemia
67770Blood from a 5-year-old girl with acute myelogenous leukemia
67771From Blood from a 5-year-old girl with acute myelogenous leukemia
123326Human, Blood1992

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Infection#Patient
#Host Body Product#Fluids#Blood
#Host#Human#Child
#Host#Human#Female

taxonmaps

  • @ref: 69479
  • File name: preview.99_3845.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1974;97_2373;98_2929;99_3845&stattab=map
  • Last taxonomy: Tsukamurella
  • 16S sequence: KF410359
  • Sequence Identity:
  • Total samples: 12359
  • soil counts: 3431
  • aquatic counts: 2978
  • animal counts: 5160
  • plant counts: 790

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
11870yes, in single cases1Risk group (German classification)
1233261Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Tsukamurella strandjordii strain DSM 44573 16S ribosomal RNA gene, partial sequenceKF4103591378ena147577
11870Tsukamurella strandjordae strain ATCCBAA-173 16S ribosomal RNA gene, complete sequenceAF2832831512ena147577

External links

@ref: 11870

culture collection no.: DSM 44573, ATCC BAA 173, CCUG 57107, KCTC 19178, JCM 11487, CIP 107755, IFM 10184

straininfo link

@refstraininfo
8610544314
86106410300

literature

  • topic: Phylogeny
  • Pubmed-ID: 19734289
  • title: Tsukamurella soli sp. nov., isolated from soil.
  • authors: Weon HY, Yoo SH, Anandham R, Schumann P, Kroppenstedt RM, Kwon SW, Stackebrandt E
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.014852-0
  • year: 2009
  • mesh: Actinomycetales/*classification/genetics/isolation & purification/physiology, Base Composition, Base Sequence, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11870Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44573)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44573
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33164Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5225
61196Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 57107)https://www.ccug.se/strain?id=57107
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86105Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID44314.1StrainInfo: A central database for resolving microbial strain identifiers
86106Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID410300.1StrainInfo: A central database for resolving microbial strain identifiers
123326Curators of the CIPCollection of Institut Pasteur (CIP 107755)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107755