Strain identifier

BacDive ID: 17066

Type strain: Yes

Species: Pseudothermotoga subterranea

Strain Designation: SL1

Strain history: <- C. Jeanthon; SL1 <- S. L'Haridon {1993}

NCBI tax ID(s): 1123385 (strain), 39100 (species)

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General

@ref: 3694

BacDive-ID: 17066

DSM-Number: 9912

keywords: 16S sequence, Bacteria, anaerobe, thermophilic

description: Pseudothermotoga subterranea SL1 is an anaerobe, thermophilic bacterium that was isolated from oil field.

NCBI tax id

NCBI tax idMatching level
39100species
1123385strain

strain history

  • @ref: 3694
  • history: <- C. Jeanthon; SL1 <- S. L'Haridon {1993}

doi: 10.13145/bacdive17066.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/thermotogota
  • domain: Bacteria
  • phylum: Thermotogota
  • class: Thermotogae
  • order: Thermotogales
  • family: Thermotogaceae
  • genus: Pseudothermotoga
  • species: Pseudothermotoga subterranea
  • full scientific name: Pseudothermotoga subterranea (Jeanthon et al. 2000) Bhandari and Gupta 2014

  • synonyms

    • @ref: 20215
    • synonym: Thermotoga subterranea

@ref: 3694

domain: Bacteria

phylum: Thermotogae

class: Thermotogae

order: Thermotogales

family: Thermotogaceae

genus: Pseudothermotoga

species: Pseudothermotoga subterranea

full scientific name: Pseudothermotoga subterranea (Jeanthon et al. 2000) Bhandari and Gupta 2014

strain designation: SL1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 3694
  • name: THERMOTOGA SUBTERRANEA MEDIUM (DSMZ Medium 688)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/688
  • composition: Name: PSEUDOTHERMOTOGA SUBTERRANEA MEDIUM (DSMZ Medium 688) Composition: PIPES 3.36301 g/l KCl 1.97824 g/l Peptone 0.98912 g/l Yeast extract 0.49456 g/l Na2S x 9 H2O 0.49456 g/l NH4Cl 0.098912 g/l MgSO4 x 7 H2O 0.0296736 g/l K2HPO4 0.0197824 g/l Nitrilotriacetic acid 0.0148368 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l CoSO4 x 7 H2O 0.00178042 g/l ZnSO4 x 7 H2O 0.00178042 g/l CaCl2 x 2 H2O 0.00098912 g/l FeSO4 x 7 H2O 0.00098912 g/l Sodium resazurin 0.00049456 g/l NiCl2 x 6 H2O 0.000296736 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l CuSO4 x 5 H2O 9.8912e-05 g/l H3BO3 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l Na2WO4 x 2 H2O 3.95648e-06 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water

culture temp

  • @ref: 3694
  • growth: positive
  • type: growth
  • temperature: 70
  • range: thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 3694
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 3694
  • sample type: oil field
  • geographic location: East Paris Basin
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Oil reservoir
#Environmental#Terrestrial#Geologic

Safety information

risk assessment

  • @ref: 3694
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
3694Thermotoga subterranea 16S rRNAU226641481ena39100
3694Thermotoga subterranea partial 16S rRNA gene, type strain DSM 9912THG9179031545ena39100

GC content

  • @ref: 3694
  • GC-content: 40
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 3694

culture collection no.: DSM 9912, NBRC 107924

straininfo link

  • @ref: 86066
  • straininfo: 48719

Reference

@idauthorscataloguedoi/urltitle
3694Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9912)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9912
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
86066Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48719.1StrainInfo: A central database for resolving microbial strain identifiers